PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G172700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HB-other | ||||||||
Protein Properties | Length: 929aa MW: 102387 Da PI: 5.7915 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.9 | 2.3e-05 | 690 | 750 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 r+kRt +++ q++e e++ + ++ + +a+ + A+kl ++t +q k+W Nr+ak Brast10G172700.2.p 690 RKKRTIMNDGQINEIENALADEPEMhrNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 750 89******************87666114556899999999999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 682 | 751 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.333 | 687 | 754 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0051 | 689 | 758 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00246 | 690 | 753 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence Send to blast |
MPPSPRPPPA PPSPLPGGLG VSVSEMIDMV SAVEELSVLT SRELSEMLKE SESFVLQCKA 60 EDGGPKQVDM EKLVSSLPRH LLAVCLELGS GSDLTYVLRG MRFLHSLSEL ATRHTRLEQV 120 LLDDVKLSEQ VLDLIFFVLA ILSYRKEENH LGASPFLHSS LVAASLHLLT SYFSSQWNEL 180 VSILLAHAKV GIFMDVAFDS LHEDMKSLNL RLSTFGTDAF PVGPLESQLT HFICQQCESS 240 LQFLLLLCQQ KSFRDRILEN KELCRNGGIL SLSLTILKLG VPECLKGSAH IASSISRLKA 300 KVLSIVLQLC EAETISYLDE VATLPKSMQL GQTFALEVLD LLKTAFGRKE KSVAGSHDKS 360 YPMGSVLISA LRLVDVFSDD SNFRSSFITN TIPFLTQILA TPHDEFVSSW CSVNMLVTED 420 DANLEYDPFG AAELALLAAS NMLTEAKANY LCPLRTINTA IPYAQTRTSY VVKIIANLHV 480 FVPNICEEQE RDLFLQKFQK YLLSESRRPS LDNPASDEAS TVCRNLGSLS HYAKLLIPNK 540 LLNEDDVHLL SEFACKLQTW CKSVAGLSTL QVAKSDASSQ IKEDLQRVQQ PLQTRANNTE 600 ESMPTPYMNH EGNARDETPR NRASINCGLL QNSVGQNLIH LGVARTTSAG YMGVSTATST 660 ELQHGRSVEH FKTPEHIKGS GLLDDDGRRR KKRTIMNDGQ INEIENALAD EPEMHRNATL 720 LQAWAEKLSG QGSEITSSQL KNWLNNRKAK LARIAKERGV PSEGENADKP STPATSHFGD 780 SSESAGEESY FPPPRVMNAL GISKGNGLLN PGTNDTTTQA EFNQNIMTSR PFTRSYSLEP 840 GRPVLLIDNE GNEIGRGEIF QVEGMAQGKS LTESRTCIID ITELKIEKWR ELPHPSEASG 900 RTFQEAESRH GGVMRVAWDV IRIAPVVL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 687 | 692 | RRRKKR |
2 | 687 | 693 | RRRKKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G172700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237478.1 | 0.0 | nodulin homeobox isoform X2 | ||||
TrEMBL | A0A0Q3PE14 | 0.0 | A0A0Q3PE14_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G11517.1 | 0.0 | (Brachypodium distachyon) |
Link Out ? help Back to Top | |
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Phytozome | Brast10G172700.2.p |