PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G110700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 845aa    MW: 92898.3 Da    PI: 6.8688
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G110700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24142243199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++a+e+          ++ +++lt +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F  
  Brast10G110700.2.p 142 FCKTLTASDTSTHGGFSVLRRHADEClppldmsR--QPPTQELTAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL- 229
                         99*****************************733..334459************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+v+v+r+
  Brast10G110700.2.p 230 -RGENGELRVGVRRA 243
                         .449999*****996 PP
2Auxin_resp1141.4e-37268350183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  W +SkWr+Lk
  Brast10G110700.2.p 268 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWAESKWRNLK 350
                         89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-42135257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.77E-41137271IPR015300DNA-binding pseudobarrel domain
CDDcd100178.73E-22140242No hitNo description
SMARTSM010197.4E-24142244IPR003340B3 DNA binding domain
PfamPF023626.7E-22142243IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928142244IPR003340B3 DNA binding domain
PfamPF065077.4E-35268350IPR010525Auxin response factor
PfamPF023097.1E-11711806IPR033389AUX/IAA domain
PROSITE profilePS5174520.763716800IPR000270PB1 domain
SuperFamilySSF542771.08E-9720792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSCAAAAAAA AAGGGEGDAA TAAARAGGGE DALFSELWSA CAGPLVTVPK VGDKVFYFPQ  60
GHIEQVEAST NQVAEQRMQL YNLPWKILCE VMNVELKAES DTDEVYAQLT LLPESKQEEN  120
ASTEEVSAVP SAAPLRPRVH SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSRQPPTQ  180
ELTAKDLHGA EWRFRHIFRG QPRRHLLQSG WSVFVSAKRL VAGDAFIFLR GENGELRVGV  240
RRAMRQQTNV PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPAE FVVPYDRYME  300
SLKRNYSIGM RFKMRFEGEE APEQRFTGTI VGMGDSDPAG WAESKWRNLK VRWDEASSIP  360
RPERVSPWQI EPAVSPPPIN PLPVPRTKRP RPNVIASAPD SSAQAKEVAP KVAAETQQHA  420
LQRAFQTQEN ATPKTGFGDG SELDIAQKSI LQPSRFEREK NNIPTQRKLG SDGWMQMNKP  480
ESYGEMLSGF QPPKDAQSQQ GFRSYPEQIA AGHSNFWHTV NSHYQDQQGN HSMFPGTWSL  540
MSQNTGFGLN KQNYPMMQEV AGLPQRAANT KFGNGVYAAL PGHGIDQYST GWFGHMMPSS  600
HMDDTQPRVI KPQPLVVAHG DMQKTKGASC KLFGIHLDSP AKSEPLKSPP SVAYDGMPQT  660
PGGAEWCRME GTDPEKCSDP SKTLKPLDAD SGPEKHLSCQ QASRNTSGKS QGGSARSCKK  720
VHKQGIALGR SVDLTKFSGY TELIAELDDM FDFNGELKSS NKEWMVVYTD HEDDMMLVGD  780
DPWSEFCNIV HKIFIYTREE VQRMAPGALN SRSEESPANS MERGSAAREV RGCLSASSLN  840
SENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1742737213354Auxin response factor 1
4ldw_A1e-1742737213354Auxin response factor 1
4ldw_B1e-1742737213354Auxin response factor 1
4ldx_A1e-1742737213354Auxin response factor 1
4ldx_B1e-1742737213354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387391KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G110700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758384.10.0auxin response factor 23 isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLI1ILH10.0I1ILH1_BRADI; Auxin response factor
STRINGBRADI4G17410.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2