PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G084600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 821aa    MW: 90885 Da    PI: 7.0319
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.5e-22139240199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+ ++L ++D ++F  
  Brast10G084600.1.p 139 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELMTKDLHGVEWRFRHIFRGQPKRHLLQSGWSVFVSNKRLVARDAFIFL- 226
                         99*****************************544..455569************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+v+v+r+
  Brast10G084600.1.p 227 -RGENGELRVGVRRA 240
                         .449999*****996 PP
2Auxin_resp112.25e-37265347183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t+s+F+v+Y+Pr+s++eFvv+++ + ++lk++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp+ W +SkWrsLk
  Brast10G084600.1.p 265 AWHAVNTGSMFTVYYKPRTSPAEFVVPCDLYYESLKQNHSIGMRFKMRFEGEEAAEQRFTGTIVGIGDSDPSGWADSKWRSLK 347
                         89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-37132268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-40133254IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-18137239No hitNo description
PfamPF023622.7E-20139240IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828139241IPR003340B3 DNA binding domain
SMARTSM010192.5E-19139241IPR003340B3 DNA binding domain
PfamPF065073.4E-34265347IPR010525Auxin response factor
PROSITE profilePS5174521.454708792IPR000270PB1 domain
SuperFamilySSF542772.06E-9712784No hitNo description
PfamPF023093.2E-6750795IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MAAAATAADG TAGRGAGGQG GAVDELYAEL WKACAGPLVT VPAVGERVFY FPQGHIEQVE  60
ASTNQVAEQQ GAPLYNLPWK IPCKVMNVEL KAEQDTDEVY AQLTLLPEKQ YENASTEGEK  120
EEVPAAVPAV HERPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM SQHPPTQELM  180
TKDLHGVEWR FRHIFRGQPK RHLLQSGWSV FVSNKRLVAR DAFIFLRGEN GELRVGVRRA  240
MRQQASIPSS VISSHSMHLG VLATAWHAVN TGSMFTVYYK PRTSPAEFVV PCDLYYESLK  300
QNHSIGMRFK MRFEGEEAAE QRFTGTIVGI GDSDPSGWAD SKWRSLKVRW DEASSVPRPD  360
RVSPWQIEPA VSPLSVNPLQ APRNKRSRPN AIASSPDLSP VNREVSSKVT ANSQHNGLPR  420
TLQRQESETS TSRFGDYNDL KTSGKLTLWP SRTDQEKSNI TVQRSSEGWM QMQRPEGYTN  480
ILSRFQPLKD AQNPLCSFPS QISGNCSNTW NIVNVHYPDQ QVNHNTFPGA WSCMPPNTGF  540
GVNQHNYLMT PDRAPSQRAE NAKFSWNGDF TSVQARGIDE RSLGWFEHAE PSPHINDASS  600
SVIKSHPLGH DLRKTKGSPC MLFGFPLDGP AKLESLITPP SVAYDGPQTP CSAKQPQTEV  660
IELDRSPGTS KVVNPLDGTQ SDSAMAKHQT CPEATRNIQS KLQTGSTRSC KKVHKQGIAL  720
GRSVDLTRFT CYDELIAELD RMFDFGGELK GSCKNWMVVY TDSDDDMMLV GDDPWNEFCN  780
VVHKIFIYTR EEVSKMNPGA LVARSEDSLS ASLERGVVGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165103692354Auxin response factor 1
4ldw_A1e-165103692354Auxin response factor 1
4ldw_B1e-165103692354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0138020.0DQ013802.1 Phyllostachys praecox ARF1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237262.10.0auxin response factor 24
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLI1IIF90.0I1IIF9_BRADI; Auxin response factor
STRINGBRADI4G07470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]