PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G070500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 382aa    MW: 41314.2 Da    PI: 6.7127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G070500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-153178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Brast10G070500.1.p 31 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 78
                        678*******************************************97 PP
2Myb_DNA-binding51.72e-1684127146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
  Brast10G070500.1.p  84 RGAFSPQEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 127
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1492678IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-222781IPR009057Homeodomain-like
SuperFamilySSF466891.64E-2829125IPR009057Homeodomain-like
SMARTSM007172.1E-103080IPR001005SANT/Myb domain
PfamPF002492.8E-133178IPR001005SANT/Myb domain
CDDcd001678.17E-93478No hitNo description
PROSITE profilePS5129424.97179133IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2582133IPR009057Homeodomain-like
SMARTSM007171.3E-1583131IPR001005SANT/Myb domain
PfamPF002496.7E-1584127IPR001005SANT/Myb domain
CDDcd001673.15E-1186126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MRKPECPATK AAAGQGNSCS NVVAAAAKLR KGLWSPEEDE RLVAYMLRSG QGSWSDVARN  60
AGLQRCGKSC RLRWINYLRP DLKRGAFSPQ EEDLIVNLHA ILGNRWSQIA ARLPGRTDNE  120
IKNFWNSTIK KRLKMSSAAS SPATTAECAS PPEPKLEVGC PDLAGLEDGG HHAMKSAWRM  180
MDSSSSTSCS SSMQTRPSSA MAAASRSYGG GLLLPLPDQV CGGGDTQAPP LFFHDHHQLS  240
FKYASGGSYY HHGVAMEHGG AAGCFMGEEV VAGEESALFN VPPPLLEPAM TAAQDQTLMA  300
SGIKSATPEA TTLSSNNGSN ITDNNDNSKN NNVVYWPEQL HGHHHHHQQQ QHMSRNVMGE  360
WDLEELMKDV SSLPFLDFQV E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27291335108B-MYB
1h8a_C2e-272913325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G070500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6720681e-149AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575963.10.0myb-related protein Zm38
TrEMBLI1II190.0I1II19_BRADI; Uncharacterized protein
STRINGBRADI4G06317.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-66myb domain protein 46