PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G051600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 28444.6 Da PI: 6.2796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++++G g+W+ ar g++Rt+k+c++rw++yl Brast10G051600.1.p 11 RGPWTVDEDLTLVNYIAEHGEGRWNCLARGAGLKRTGKSCRLRWLNYL 58 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.8e-18 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Brast10G051600.1.p 64 RGNFTAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 107 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.471 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.29E-10 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 24.451 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 64 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 66 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-12 | 66 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAEADAAEVR RGPWTVDEDL TLVNYIAEHG EGRWNCLARG AGLKRTGKSC RLRWLNYLRP 60 DVKRGNFTAE EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA 120 NSSKFKDAMR YLWMPRLADH HHLHHQASDH AAMPSGQQPI GGYMESSVGM ATSSSGSFAS 180 ESYDGGFYAN ACVGETMLND DGNCWIQEAG FCAEAAKDCQ FQDHELSGWV QGFSEGLAED 240 FWSLDDVWKM Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 8 | 111 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 7 | 111 | 23 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G051600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009018 | 1e-120 | BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579302.1 | 1e-174 | transcription factor JAMYB | ||||
Swissprot | Q2QZJ8 | 1e-106 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | I1IHH6 | 1e-173 | I1IHH6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G04627.1 | 1e-173 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-75 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Brast10G051600.1.p |
Publications ? help Back to Top | |||
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