PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast10G046400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 748aa MW: 82613.9 Da PI: 5.5386

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast10G046400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	345.3	1e-105	367	738	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+++d + a++lL++++ +a dgd +qRla++f+e+L+arla+++ + ++l +++ s ++ l+a++l+ + + Brast10G046400.1.p 367 LRTLLIHCAQAVATDDRRSATELLKQIKLHARHDGDGTQRLAHCFAEGLQARLAGTGGLVHQSLMATRIS---AVDMLKAYQLYMAAICFK 454 6789*************************************************888888777777776...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k++++ N +I++a g++++HiiD++i++G+QWp++l+ +++R++gpp++RiTg++ p++g + ++eetg+rL+k+A+e++vpf++++ Brast10G046400.1.p 455 KVCFIFSNFTIYNASLGKKKIHIIDYGIQYGFQWPCFLRRISEREGGPPEVRITGIDLPQPGfrPAARIEETGRRLSKYASEFKVPFKYHA 545 **********************************************************99*************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++++++e+l+ e+L+++p+E+l+Vn+ +q ++l+desv +es+rd vL+ +++++P+ ++++ + + +++ F++rf e l yysalfd l Brast10G046400.1.p 546 MAVTNMESLRKEDLNIDPEEVLIVNCLFQFKNLMDESVVIESPRDIVLNNIRKMQPHAFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVL 636 9************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +++ pr++e+r+ +E+ ++gr++ nv+acega+r+er et+++W+ r ++aG+k++pl+ ++ ++++ +++++ + + ++ ++++l+ gW Brast10G046400.1.p 637 DTTTPRDNEQRMLIEQNIFGRAALNVIACEGADRVERPETYKQWQVRNQRAGLKQLPLNPDIIETVRDKVKNCYHKDFVIDVDHNWLLEGW 727 **********************************************************************889********** PP GRAS 363 kdrpLvsvSaW 373 k+r L+++S+W Brast10G046400.1.p 728 KGRILYAISSW 738 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.596	341	719	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-103	367	738	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGSSPYLPSA MDSPGSDDPS LYLYLSDLIP GSPPASPSAY LDLPPTPHHE QPQPQQQQQR 60 SSGYDDRSGG GGGGGGDKSS STPEDLVLPF ISRMLMEEDI DDKFFYDYPD NPALLQAQQP 120 FLDILSDPSS NTTSSDSGNN NNPCSPSDAS FSPAGPLPPT PAAVDSYDHH QPFQYDLDPA 180 AFFSAGANSD LMSSAFLKGM EEANKFLPSQ GNLVIDLEAS SGQFLKGVEE GNKFLPREDK 240 LVVGFNGRAA PVSAPTAVAS VKKEEPVDSV SANSRGGSRG RKNPYHDDEL EQEVGRNSKQ 300 SALQGDDISA RELFDRVLMP SPEMCVEQMQ NLRIAMQEAV AKNDTGGGKA GNGKGRGRRG 360 GSDVVDLRTL LIHCAQAVAT DDRRSATELL KQIKLHARHD GDGTQRLAHC FAEGLQARLA 420 GTGGLVHQSL MATRISAVDM LKAYQLYMAA ICFKKVCFIF SNFTIYNASL GKKKIHIIDY 480 GIQYGFQWPC FLRRISEREG GPPEVRITGI DLPQPGFRPA ARIEETGRRL SKYASEFKVP 540 FKYHAMAVTN MESLRKEDLN IDPEEVLIVN CLFQFKNLMD ESVVIESPRD IVLNNIRKMQ 600 PHAFIHAIVN GSFSAPFFVT RFREVLFYYS ALFDVLDTTT PRDNEQRMLI EQNIFGRAAL 660 NVIACEGADR VERPETYKQW QVRNQRAGLK QLPLNPDIIE TVRDKVKNCY HKDFVIDVDH 720 NWLLEGWKGR ILYAISSWVA NDASSHF*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGSSPYLPSA MDSPGSDDPS LYLYLSDLIP GSPPASPSAY LDLPPTPHHE QPQPQQQQQR  60
SSGYDDRSGG GGGGGGDKSS STPEDLVLPF ISRMLMEEDI DDKFFYDYPD NPALLQAQQP  120
FLDILSDPSS NTTSSDSGNN NNPCSPSDAS FSPAGPLPPT PAAVDSYDHH QPFQYDLDPA  180
AFFSAGANSD LMSSAFLKGM EEANKFLPSQ GNLVIDLEAS SGQFLKGVEE GNKFLPREDK  240
LVVGFNGRAA PVSAPTAVAS VKKEEPVDSV SANSRGGSRG RKNPYHDDEL EQEVGRNSKQ  300
SALQGDDISA RELFDRVLMP SPEMCVEQMQ NLRIAMQEAV AKNDTGGGKA GNGKGRGRRG  360
GSDVVDLRTL LIHCAQAVAT DDRRSATELL KQIKLHARHD GDGTQRLAHC FAEGLQARLA  420
GTGGLVHQSL MATRISAVDM LKAYQLYMAA ICFKKVCFIF SNFTIYNASL GKKKIHIIDY  480
GIQYGFQWPC FLRRISEREG GPPEVRITGI DLPQPGFRPA ARIEETGRRL SKYASEFKVP  540
FKYHAMAVTN MESLRKEDLN IDPEEVLIVN CLFQFKNLMD ESVVIESPRD IVLNNIRKMQ  600
PHAFIHAIVN GSFSAPFFVT RFREVLFYYS ALFDVLDTTT PRDNEQRMLI EQNIFGRAAL  660
NVIACEGADR VERPETYKQW QVRNQRAGLK QLPLNPDIIE TVRDKVKNCY HKDFVIDVDH  720
NWLLEGWKGR ILYAISSWVA NDASSHF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-42	371	738	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast10G046400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579265.1	0.0	scarecrow-like protein 34
TrEMBL	A0A0Q3EEW9	0.0	A0A0Q3EEW9_BRADI; Uncharacterized protein
STRING	BRADI4G03867.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-160	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast10G046400.1.p