PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G040200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 239aa    MW: 27566.3 Da    PI: 8.4723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G040200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-181057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed++lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Brast10G040200.1.p 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding54.62.5e-1763108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Brast10G040200.1.p  63 RGRMTAHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.259557IPR017930Myb domain
SMARTSM007171.9E-15959IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-299104IPR009057Homeodomain-like
PfamPF002491.7E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-201164IPR009057Homeodomain-like
CDDcd001672.55E-111257No hitNo description
PROSITE profilePS5129425.53958112IPR017930Myb domain
SMARTSM007172.6E-1662110IPR001005SANT/Myb domain
PfamPF002497.7E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2365111IPR009057Homeodomain-like
CDDcd001671.11E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTAHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRNMS  120
PSSSSSSLTY QSCHPETPSI AGIDEQELHG GSNCITSILK GMPADMDGYL MDQIWMEIEA  180
PSGPSFHDGK DNAYSSHSGP LLQPPMWDCY YPEACWKMDD EIKISPQLGY SKGMDPCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2871121105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-27711255159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-27711255159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-28101124105C-Myb DNA-Binding Domain
1msf_C4e-28101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G040200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072140.0AK107214.1 Oryza sativa Japonica Group cDNA clone:002-125-C06, full insert sequence.
GenBankCT8332820.0CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.
GenBankDQ0752630.0DQ075263.2 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS2-3 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237138.11e-152myb-related protein MYBAS2
SwissprotQ4JL761e-136MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLI1IHB01e-151I1IHB0_BRADI; Uncharacterized protein
STRINGBRADI4G04050.11e-151(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.38e-77myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]