PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G036700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 439aa    MW: 48567.2 Da    PI: 8.5263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G036700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019931123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C++sF++   L  H++ H
  Brast10G036700.1.p  9 HVCNKCNRSFPSGKALGGHMSYH 31
                        79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.45E-9931No hitNo description
PROSITE profilePS501578.829936IPR007087Zinc finger, C2H2
PfamPF139121.4E-9933IPR007087Zinc finger, C2H2
SMARTSM003550.052931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.45E-9347374No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5350375IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-10351376IPR007087Zinc finger, C2H2
SMARTSM003550.0078352374IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.258352379IPR007087Zinc finger, C2H2
PROSITE patternPS000280354375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAPRGRPKHV CNKCNRSFPS GKALGGHMSY HWRKAKQPKS TPGPTAIVVD LHVTLLSPSD  60
KETLVPSSGT QCHLSSKVFS TCNSPREHMK HSKKVLGKPM EEAPGLMEAL VIADGDNDAM  120
VFPPVKRKRS KREIPVHTFG ETDAAITLLL LSDHSSKISA YEGYEDKDRT ILVPNVSKDV  180
KLNSFDHLLV RSAEFKKPKG HKSSAYDDFY GQCEKDNNWI PNAPKKDTHL FASDPKCNPL  240
VPSVPKNSAY EDCYGQCEKN NSLIPNDPKK DTNLIPNVPE KDSTLIPNIP KDTCLIPNVP  300
EKDNHSIANT PNEIELNVLD YGLTEDAELR KPRTDSPVEE IKCSSAVKVK RYQCNACGKS  360
FGSGQSLGGH MRCHHPRRND RQGLADCPDF VVAKEQTKKL ELDSRLLDLR LPALTVRDYV  420
SSGLKSEPEP VRLASTVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G036700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579251.10.0uncharacterized protein LOC100831297
RefseqXP_014757680.10.0uncharacterized protein LOC100831297
RefseqXP_014757681.10.0uncharacterized protein LOC100831297
TrEMBLA0A0Q3EIG70.0A0A0Q3EIG7_BRADI; Uncharacterized protein
STRINGBRADI4G03630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-07C2H2-like zinc finger protein