PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G034900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 185aa    MW: 19583.4 Da    PI: 10.5177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00185575323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C  Cgk F++   L  H  +H
  Brast10G034900.1.p 55 CAVCGKAFPSYQALGGHKASH 75
                        **********99999998887 PP
2zf-C2H212.90.00034109129323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk F +   L  H r+H
  Brast10G034900.1.p 109 CNVCGKAFATGQALGGHKRRH 129
                         *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-95175No hitNo description
PROSITE profilePS501579.9515380IPR007087Zinc finger, C2H2
SMARTSM003551.25375IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-125377IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-9102129No hitNo description
PfamPF139124.1E-11106131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263107129IPR007087Zinc finger, C2H2
SMARTSM003550.37107129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4108129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAVEPVLEAA SASASASKRK RSRLPMAPSE EQQQLALWLL MLARGDREQE RLHGCAVCGK  60
AFPSYQALGG HKASHRKLLP QPSLQKPPQD VESASKSASG GGSGRAHLCN VCGKAFATGQ  120
ALGGHKRRHY DGTIGSAKAN RGFDLNLPAL PDMVVAADRR QDEVLLSPVS SSLEKKKPRL  180
VITA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G034900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579239.17e-81zinc finger protein 1
SwissprotQ9SSW21e-31AZF2_ARATH; Zinc finger protein AZF2
TrEMBLI1IH352e-79I1IH35_BRADI; Uncharacterized protein
STRINGBRADI4G03410.13e-80(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-22zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]