PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G034100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 192aa    MW: 19852.6 Da    PI: 9.9403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G034100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05120142123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cgk F +   L  H r+H
  Brast10G034100.1.p 120 HVCNVCGKAFATGQALGGHKRRH 142
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.42E-96185No hitNo description
SMARTSM003551.26385IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-136387IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3076390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-9115142No hitNo description
Gene3DG3DSA:3.30.160.602.4E-5118142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11119144IPR007087Zinc finger, C2H2
SMARTSM003550.061120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAVAAVPEAA AILPSPSPTT SASASASASK RKRSRLMAPS EEEQLALWLL MLARGDREQE  60
RLHGCAVCGK AFPSYQALGG HKASHRKPPS SLPEPVVGEH EQKPQDVESS SVSGGSGRAH  120
VCNVCGKAFA TGQALGGHKR RHYDGTIGSA KGTAMATAAN RGFDLNLPAL PDLSPVPSSS  180
LEKKPRLIIT A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G034100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557426e-34EU955742.1 Zea mays clone 1544525 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579239.12e-86zinc finger protein 1
TrEMBLI1IH355e-85I1IH35_BRADI; Uncharacterized protein
STRINGBRADI4G03410.19e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.11e-28zinc-finger protein 3