PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G031800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 379aa    MW: 40134.6 Da    PI: 9.2263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G031800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32242297156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rFv a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Brast10G031800.2.p 242 KARRCWSPELHRRFVAALQRLGGPQVATPKQIREMMKVDGLTNDEVKSHLQKYRLH 297
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.865239299IPR017930Myb domain
SuperFamilySSF466892.99E-17239300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-29239300IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26242297IPR006447Myb domain, plants
PfamPF002491.3E-7244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGPSSSARKQ QDQAAVLLLR EPEEEDNHHR RMRALAARAA AGSLRAAVAA DEGMDKDKAA  60
RLEECARGLQ AEKAKMEVFR RELPISVTLI ADVIEWLKDE VERHRRPPPD VLAAPSSSPS  120
PAAAKRKQAE AADASDKRSW MSSAQLWTCG SHTGNSSNGG MIRKQQQPQK VSTTFMPLGG  180
GPPRTTMAKS PERPEAAAAM AVVPADLSLS SPAATADAAP SSNSSAVTTD AAGAQSAQQQ  240
RKARRCWSPE LHRRFVAALQ RLGGPQVATP KQIREMMKVD GLTNDEVKSH LQKYRLHTRR  300
ASSSDGGGDQ QQQYAASQHS TSKSGGRGGS PVQLTGSSRA TAGDSCDAGE EEEDEDGRSA  360
SYGWGMQLNG AMAAASSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-13242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-13242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-13242295154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-13242295154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G031800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579224.10.0transcription factor HHO6
TrEMBLI1IH020.0I1IH02_BRADI; Uncharacterized protein
STRINGBRADI4G03160.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-28G2-like family protein