PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G030200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 567aa    MW: 65099.4 Da    PI: 6.0101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G030200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-141892661396
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++ +++p kf+ ++ g+   s  + +e ++g+ +++++  +k  +r+vl++GW  F++a +Lke D++vF+++g+s f  +  +
  Brast10G030200.1.p 189 RQEMSIPEKFVYNFRGQ--ISGVINVEAPDGNGYSIEV--TKDLNRIVLGSGWAAFADAYELKEHDVLVFRYIGDSHF--KTII 266
                         4569*******888777..5668***************..**********************************9999..5555 PP
2B342.89.5e-14451533386
                         EE-..-HH.HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   3 kvltpsdv.lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         +vl +s+  +k++ l++p +fa++  ++ + +  l ++  + ++W v++  + +s ++  +  W++Fv++n+L+egD+++F+l++
  Brast10G030200.1.p 451 TVLQTSNLqSKHNSLIIPFEFAADR-LQRKLHDVLLVRPGRAEKWHVRYYQWSTSIGFRAQ-PWSKFVRDNRLREGDVCIFELIK 533
                         55555554045589********666.4444554555566777*******779999998766.********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-836114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-53798IPR015300DNA-binding pseudobarrel domain
CDDcd100179.84E-741110No hitNo description
SuperFamilySSF1019362.35E-19173272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17175272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.223177270IPR003340B3 DNA binding domain
SMARTSM010192.3E-4180270IPR003340B3 DNA binding domain
PfamPF023628.6E-13189265IPR003340B3 DNA binding domain
CDDcd100175.89E-15192268No hitNo description
Gene3DG3DSA:2.40.330.101.7E-18441534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-18443535IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-14447533No hitNo description
PfamPF023621.7E-11449533IPR003340B3 DNA binding domain
SMARTSM010194.0E-7449540IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139450554IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAQDHEQDD RSGHNISSKS CHRCKQCDAH YYWCHLDDTQ KYFFKCMFED FQDKMVIPMK  60
FVENFKGQIS EVVKLEAPDG NIYSVHSIKD LNKIVLGYTG NSHFKVLIFD NASCCEKEVF  120
HVVMNCGPDA QEEGTHLDRS PPSERRSENG GPSNGESRRR CEQCDVHYYW HHLDDTQKYF  180
LRLMVGNFRQ EMSIPEKFVY NFRGQISGVI NVEAPDGNGY SIEVTKDLNR IVLGSGWAAF  240
ADAYELKEHD VLVFRYIGDS HFKTIIFDPS GCEKELFHVA MNRAPKSNVR ETGILHDRPV  300
PKETRCRQSE SCDDDLGGQR VEQHSLVDDS DDNDDNDSDD NDDNDSDDNY NVSDEDYSDE  360
YDSESVPSQL VESPHKAYNS KKFSGKAKPR KELSESPNSS SCDDVKHEAS DEDESDHEPY  420
YSRSAKRLLD TEKREIIGLA SIQPNNPAFM TVLQTSNLQS KHNSLIIPFE FAADRLQRKL  480
HDVLLVRPGR AEKWHVRYYQ WSTSIGFRAQ PWSKFVRDNR LREGDVCIFE LIKCARRKKM  540
KKATMAMMAV HVARRRKADG RFVAVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1536556RKKMKKATMAMMAVHVARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G030200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758592.11e-173B3 domain-containing protein Os12g0591400 isoform X2
TrEMBLA0A0Q3EI821e-172A0A0Q3EI82_BRADI; Uncharacterized protein
STRINGTraes_5DS_485F1D5FD.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-13B3 family protein