PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G029600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 366aa    MW: 41920.4 Da    PI: 7.178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G029600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17451251299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + + +++p kfa++++g+   +k  tl+ +sg++W+v +  +k  ++ ++++GW  F+ka++L+e D++ Fk + + +f   v++f++
  Brast10G029600.1.p  45 Q-QSISIPEKFANNFSGQ--IDKGCTLKAPSGETWRVGI--EKIADKLFFGSGWDAFAKAHELQEHDILFFKCSASGSF--DVMIFDA 125
                         3.349*******888777..45569999***********..*******************************7655555..9999987 PP
2B351.22.3e-16257356199
                         EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         f+ vl +s+v  + + l+++ kfa++h +g   ++ +l l+  + ++W vk+ yr +s r +  + W +Fv++n+L+eg +++F+l++  +
  Brast10G029600.1.p 257 FVVVLQKSHVRHRnNFLIISSKFAADHlEGR--SQDMLLLRPNRKEKWYVKYYYRASSIRGFHCQRWVKFVRDNKLREGYICIFELMKGgR 345
                         666777788776637789*********6444..333666777888*******99999999667779*******************99777* PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         +++ +v+v+rk
  Brast10G029600.1.p 346 QTTIMVHVLRK 356
                         ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2029128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95733126IPR003340B3 DNA binding domain
CDDcd100174.33E-1535124No hitNo description
Gene3DG3DSA:2.40.330.109.5E-2036128IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-836126IPR003340B3 DNA binding domain
PfamPF023623.8E-1444125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19249355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-20251356IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-18255355No hitNo description
SMARTSM010193.1E-12257357IPR003340B3 DNA binding domain
PfamPF023628.1E-15257356IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828258357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAAGEMMDE KGGCGRCREW QEHYYWEHMD VSKIRFSKIM AGDFQQSISI PEKFANNFSG  60
QIDKGCTLKA PSGETWRVGI EKIADKLFFG SGWDAFAKAH ELQEHDILFF KCSASGSFDV  120
MIFDASGCEK VLCFFTDKRG TNMHKHFDRI VSQQAEEHCL LSDSGDVNVA PSPLVGSPHK  180
ASASNKPSGK TKTREETESP NNSDYRVKHE LTEEEEDTDD EDNDSNKYYS RFANYITLGE  240
REEIFGLASI QPGNPIFVVV LQKSHVRHRN NFLIISSKFA ADHLEGRSQD MLLLRPNRKE  300
KWYVKYYYRA SSIRGFHCQR WVKFVRDNKL REGYICIFEL MKGGRQTTIM VHVLRKVDDR  360
FVLLG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G029600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237091.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-151Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0Q3EEB50.0A0A0Q3EEB5_BRADI; Uncharacterized protein
STRINGBRADI4G02950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-34B3 family protein