PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast10G026000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25537 Da PI: 6.6448 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.1e-11 | 141 | 181 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR ++ ++f +L++l+P + +K + a++L ++++Y+ksLq Brast10G026000.1.p 141 KRRRCKVTERFKTLQQLVPGC-----QKCNQASTLDQTIKYMKSLQ 181 9*******************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.497 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-10 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-13 | 138 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.20E-11 | 140 | 185 | No hit | No description |
Pfam | PF00010 | 9.5E-9 | 141 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 141 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSVTGSGYSG GCFAQLAEAA ATGAGAGDDD FLDTCYHSTY DNGGDDLFEL AMEELQRRPL 60 SPVPVVAAEM LYAVPPSEEE MAAWLYPIVR GEELQVDNNG HVRGQNMVVG DHQALSSKEE 120 PKKSKYTADQ KLPETEKNCA KRRRCKVTER FKTLQQLVPG CQKCNQASTL DQTIKYMKSL 180 QQQLEYSMAS IVGCSMRPAY MQPPGCYQPR FQMGHRRPCY FHWLTIRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast10G026000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368QN00 | 1e-29 | A0A368QN00_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6283 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-13 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast10G026000.1.p |