PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G022900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 402aa    MW: 43819.6 Da    PI: 6.0153
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G022900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.1e-1490127340
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         +++C+Ckks+Clk+YC Cfa+g++Cse C Ce C Nk 
  Brast10G022900.1.p  90 CRTCSCKKSRCLKLYCVCFASGSHCSELCGCEPCYNKP 127
                         789*********************************96 PP
2TCR46.85.7e-15166201439
                 TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++C+Ckks ClkkYC+C++ g+ Cs +C+C+dCkN 
  Brast10G022900.1.p 166 RKCTCKKSGCLKKYCDCYQGGAGCSINCRCDDCKNP 201
                         79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-988129IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.52789203IPR005172CRC domain
PfamPF036382.7E-1091126IPR005172CRC domain
SMARTSM011141.4E-13163204IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-11166200IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEPTDPGEPP NPAPQLEPSG SEAPPPPPVP PPPPAPAPAP APAEAAAEPS PMPAPAPPSA  60
VWQAVSLPPA EANGSSDRKK KRKADEGEGC RTCSCKKSRC LKLYCVCFAS GSHCSELCGC  120
EPCYNKPIHG VPRNTPALPL KVVQTAEAGQ DSAEQLIRSP MDLVRRKCTC KKSGCLKKYC  180
DCYQGGAGCS INCRCDDCKN PYGRKVGVIL DGKGMLPSPT PNERNGTEAD SSDDDDDEDD  240
YYMNRPLSPI PPSPVSRESS FQQETLVGVE VHTMNGHLYP KPLAQVRPEP WQLSRRPAEE  300
ARGEPWRYLR RPSEDGTSDV MEGHAEPKFQ RDNSNKQPES HPDRFSIPRC IEVMNAMADL  360
SPVDKSLAPD IFLDASNREI FLSLSVDIRT MWLKRKMRNL V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G022900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237057.20.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 3
TrEMBLI1IGP00.0I1IGP0_BRADI; Uncharacterized protein
STRINGBRADI4G02410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-42TESMIN/TSO1-like CXC 2