PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G016600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 316aa    MW: 34301.7 Da    PI: 8.7703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  Brast10G016600.1.p  5 KQKWTAEEEAALKAGINKHGAGKWRTILKDPEfssvlRYRSNVDLKDKWRN 55
                        79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.427161IPR017930Myb domain
SuperFamilySSF466891.12E-15259IPR009057Homeodomain-like
SMARTSM007173.2E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13556IPR009057Homeodomain-like
PfamPF002496.0E-8556IPR001005SANT/Myb domain
CDDcd116606.00E-20657No hitNo description
PROSITE profilePS5150422.429115186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.5E-14116188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.1E-9116181IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.44E-14117190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.6E-8123179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI NKHGAGKWRT ILKDPEFSSV LRYRSNVDLK DKWRNMNVTV  60
NASGSRNDKA RTTPAAKKPR SAPKQEGPST ALATITSDGD DDVADVMPLA TAGSANKSLS  120
RLENIILEAV KSLNEPTGSN KTAVSNYIEE QYWPPADFDH VLSAKLNELT ATGKLLKVNR  180
KYRIAPSSSF LEGRSSKMLL LEDIQKEPNK VERAERVERA ERVERAERVE RDDLVAQTKS  240
QVDAELARMR NMTAEEATAA AARAVAEADA IMAEAEAAVR EAEAAEADAI AAQAFAEAAM  300
LTLKNRSSAK LIIRG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2495641e-161AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237024.10.0single myb histone 5
SwissprotC0HIA31e-101SMH6_MAIZE; Single myb histone 6
TrEMBLI1IGG31e-180I1IGG3_BRADI; Uncharacterized protein
STRINGBRADI4G01770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-64telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]