PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G012500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 328aa    MW: 35872.3 Da    PI: 8.8306
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.73e-31162218158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  Brast10G012500.1.p 162 DAPIYVNAKQYEAILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 218
                         68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-35160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.736161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-28164218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-23164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-23195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMSFKNYEGF GSQLAAGGAP LPPWWAPPQL LYGEPADQGR PPAVSMSPEG ACRDGQFQVV  60
PRAQSLLDAP PPPQTMMERG ISEGLKFSMA HGRGGKGSEH SATIALQSPF SEYNDRFELG  120
LGQTVISSNY PYTDQQYGIL SHHGTRSMPN GRMLIPLNMP ADAPIYVNAK QYEAILRRRR  180
ARAKAEKENR LVKARKPYLH ESRHLHAMRR ARGSGGRFLN TKKEINGKDA CVGDKTLDSN  240
PLMRPAASPS SGIQHSEQGN RSSVSSLSGS EVTSLYEHED VDHYNGFEHL RTHFFTPLPS  300
IMDGEHGAGN PFKWAAASDG CCDLLRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17162224264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577268.10.0nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_010237001.10.0nuclear transcription factor Y subunit A-2 isoform X1
RefseqXP_024310184.10.0nuclear transcription factor Y subunit A-2 isoform X1
TrEMBLI1IGB50.0I1IGB5_BRADI; Uncharacterized protein
STRINGBRADI4G01380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-30nuclear factor Y, subunit A2