PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G007900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 353aa    MW: 37338.5 Da    PI: 6.6813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G007900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-15153199455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Brast10G007900.1.p 153 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 199
                         5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-20153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-18154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-15154203No hitNo description
PfamPF000108.7E-13154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-17155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEESSFFMQW ALNTLDQQNH PSSSSAPAPP YDGGGGDSPS FPSLQALRQS GRGGARNLQV  60
DVHRAATSWS GSDDSPAAAA AAMDHDASPA AAGWSPHTAR ARTTSGGGRP MSWNFGAASA  120
QPTGADAIIS PPPAAPARSG GGRQASSPGP VQDHIIAERR RREKINQRFI ELSTVIPGLK  180
KMDKATILGD AVKYVRELQD KVKTLEDEDD NQQHTSATIQ YSAVLVNKKK PCLASIATSS  240
DEAGGESSES QNSRGLPEIE VRLSEKSVLV RIHCESAKGL LVRVLAEVEA LRLAITHTSV  300
MPFPAATAII TITAKVEEGF NSTVEEIVRK LNSALHRHYS ANSDQNTANG EC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14153208863Transcription factor MYC2
5gnj_B7e-14153208863Transcription factor MYC2
5gnj_E7e-14153208863Transcription factor MYC2
5gnj_F7e-14153208863Transcription factor MYC2
5gnj_G7e-14153208863Transcription factor MYC2
5gnj_I7e-14153208863Transcription factor MYC2
5gnj_M7e-14153208863Transcription factor MYC2
5gnj_N7e-14153208863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERRRRE
2158163RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast10G007900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579101.11e-173transcription factor bHLH18
RefseqXP_014758054.11e-173transcription factor bHLH18
TrEMBLI1IG631e-171I1IG63_BRADI; Uncharacterized protein
STRINGBRADI4G00920.11e-172(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-31bHLH family protein