PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G267800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 467aa    MW: 49218.8 Da    PI: 9.5408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G267800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07218241123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++CpdCg +F r ++L+rH++t H
  Brast09G267800.1.p 218 FSCPDCGDVFVRAESLHRHQSTrH 241
                         89*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.783218246IPR007087Zinc finger, C2H2
PROSITE patternPS000280220241IPR007087Zinc finger, C2H2
SuperFamilySSF563995.75E-17243465No hitNo description
Gene3DG3DSA:3.90.228.105.3E-9244465IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVEPAAAKKS TTSMTSSSAM RKKKPEKERL AAEKQQQQKS GSKKQSSSGT AGAEPAAAES  60
PSYRLALRSI FSCRNNQAHH RIPPAADSGA AAAMASKKCK KQQQQLGCSS GASICKLRDA  120
GPRRPVLLEE PPSVDAMTAK RRASVSGGGS GGERRVVKKA LQQQQQRQQG EAVAVVSSSS  180
SSSSAAGGSF RLRRLSGCYE CQHMVVDPVG GSMRAAVFSC PDCGDVFVRA ESLHRHQSTR  240
HAVSELGPED TSRNIIEIIF QSSWLKKQSP VCAVDRILKV HNAPATLARF EAHRDAVKAR  300
AFSAGSGGGG ARCTADGNEL LRFHCAALSC SLGLRGATHL CAHASCAACA IVRDGFVVVP  360
GAGVRTMATS GRAHDAVIVE DGGERRRAML VCRVIAGRVK RPAQEQEAAA APEPEKKDDL  420
PEMGTKTAEE EYDSVAGSAG VYSSMDELEV FNPTAILPCF VVVYKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G267800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227348.10.0uncharacterized protein LOC100835063
TrEMBLI1J3R20.0I1J3R2_BRADI; Uncharacterized protein
STRINGBRADI5G27290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-81C2H2-like zinc finger protein