PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G257200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 300aa    MW: 31001.3 Da    PI: 5.4206
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G257200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12131175347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Brast09G257200.1.p 131 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 175
                         6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.2831673IPR017884SANT domain
SMARTSM007170.0281771IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-82075IPR009057Homeodomain-like
PROSITE profilePS5129416.605124180IPR017930Myb domain
SuperFamilySSF466891.94E-16126181IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17128178IPR006447Myb domain, plants
SMARTSM007179.3E-11128178IPR001005SANT/Myb domain
CDDcd001673.17E-10131176No hitNo description
PfamPF002493.4E-11131175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-11131174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAVEEASSSG GGEEGSGSGG WTREQEKAFE NALAAAEEEP EGDAAWEEMA AAVEGKTAEE  60
VRRHYELLVE DVDGIETGRV PLLVYAGDAA AEEGGSGGGG GGGGKKGGGG GHGDKASAAK  120
SAEQERRKGI AWTEDEHRLF LLGLEKYGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRERRRSS IHDITSVNNG DTSAAQGPIT GTNGQVANPG KSPKQPLQPA NPPPGVDAYG  240
TTIGQPVGGP LVSAVGTPVS LPVPAPPHLA YGMHAPVPGT VVPRAPINMP YPMPPPSSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G257200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580818.21e-160transcription factor SRM1 isoform X2
SwissprotQ9FNN67e-98SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0Q3EC241e-159A0A0Q3EC24_BRADI; Uncharacterized protein
STRINGBRADI5G26110.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-75MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]