PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G257100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 457aa MW: 48719.9 Da PI: 6.585 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.8e-16 | 325 | 420 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 k lt+sdv++ gr+vlpk+ ae++ + ++ + l++ d + +W++k+++ ++ks++y+l+ + eFvk++gL++gD+++++ ++ Brast09G257100.1.p 325 KDLTNSDVGNIGRIVLPKRDAEANlpALLERDGLILQMDDFNLvATWNFKYRFwpNNKSRMYILE-STGEFVKSHGLEAGDTLIIY--KNp 412 789***********************777778888999995545*******99787888888888.9*******************..666 PP SEE..EEE CS B3 88 sefelvvk 95 ++++++v+ Brast09G257100.1.p 413 ESGKFLVR 420 88877775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 320 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-17 | 322 | 419 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.0E-9 | 323 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.545 | 323 | 425 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-13 | 325 | 420 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.25E-21 | 327 | 420 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MAEAAKGSSS SPTAGGGGAG GAVVGAAARG GFPAPAGAAG AAAPHSHGTS FQALLASMGN 60 NRCVSPAAAA NGGLHHLQGH QFYNNHPAAV AGGGGGPIHA PPPMPVAMAP PYAAASPTMQ 120 PPPCALSGYQ YWQATGSQNG VSAQQVPGGF ADWTVYNHSA FVSVTCGSSS SSNNGYHQRL 180 RPCSNTAWPN FMTRNPCYST YPPAIHDHQS SSYHNNNHAE DSGFASSFRV DPQLAPVPCF 240 PTMSLASNNH SPVQFFNEAP YTTKLQTEAM HTQKEKNSED PPDMESENSE EQNHNPVHEN 300 LNLNQGPEDL TARFNCKEYH IVLRKDLTNS DVGNIGRIVL PKRDAEANLP ALLERDGLIL 360 QMDDFNLVAT WNFKYRFWPN NKSRMYILES TGEFVKSHGL EAGDTLIIYK NPESGKFLVR 420 GEKASQQSAP LLCLECKEEG SNSEECGFAL SLHKRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-36 | 314 | 411 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-36 | 314 | 411 | 4 | 101 | B3 domain-containing transcription factor LEC2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G257100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579476.4 | 0.0 | putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | A0A0Q3EBV4 | 0.0 | A0A0Q3EBV4_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G26100.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G257100.1.p |