PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G248000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 214aa MW: 22354.1 Da PI: 8.8885 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.4e-08 | 14 | 39 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + C++Gd+C+FaHg+ Brast09G248000.2.p 14 KTRMCTKYNTAEGCRFGDKCHFAHGE 39 9***********************96 PP | |||||||
2 | zf-CCCH | 40.3 | 5.4e-13 | 179 | 204 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +GdrC+FaHg+ Brast09G248000.2.p 179 YKTKICENFLK-GTCTFGDRCHFAHGE 204 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-13 | 11 | 42 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.751 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-8 | 13 | 42 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 14 | 39 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.67E-13 | 75 | 151 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.0E-10 | 80 | 150 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 3.8E-14 | 80 | 150 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.544 | 81 | 145 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 6.4E-10 | 83 | 145 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.27E-12 | 83 | 145 | No hit | No description |
SuperFamily | SSF90229 | 9.68E-10 | 177 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-15 | 177 | 208 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.92 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-9 | 178 | 204 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 179 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDHGANSHPA PAGKTRMCTK YNTAEGCRFG DKCHFAHGER ELGRTTYESS YAPPMGGRFG 60 SRHEPPPPAM TGPPTGSFGA SATAKISVDA ALAGGIIGKS GVNTKQICRV TGVKLSIRDH 120 ESDPNLKNIE LEGNFDQIKQ ASDMVGELIA TISASTPLKN PAGAVPPAGR GGPGGRSNYK 180 TKICENFLKG TCTFGDRCHF AHGENEQRKG AAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G248000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580767.1 | 1e-138 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-104 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | I1J334 | 1e-137 | I1J334_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G25340.1 | 1e-138 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 3e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G248000.2.p |
Publications ? help Back to Top | |||
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