PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G247900.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 425aa    MW: 45650.4 Da    PI: 6.6205
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G247900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32235289155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r+rWt++LHerFv++v++LGG+++AtPk il+lm+ +gLt++h+kSHLQkYR+
  Brast09G247900.3.p 235 KTRIRWTQDLHERFVDCVSKLGGADRATPKGILKLMNSDGLTIYHIKSHLQKYRT 289
                         68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.676232292IPR017930Myb domain
SuperFamilySSF466895.55E-17233289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28234289IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-24235289IPR006447Myb domain, plants
PfamPF002499.2E-9239288IPR001005SANT/Myb domain
PfamPF143793.0E-22324370IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MMNTKKIKLH DRQYCNGMAP QQLARHQLMA PAASYDSSGA GSGGLSSSGL FLDGFSSSAL  60
LLHQQQQHGG WLQDLDQCAA MAPSCVVGSN TAMFYAAEKL LGMPQLDCCP PLRTLPTTTM  120
VPAASAESEL YRRPLELDRS AVRTYFVRPR GDGGDLPSQP QQQESVQLNN HGLYGGSSGS  180
AIKPHSFVPA QVLCDLAIPA MDQALGGLQV SQTAESGHGH LPRSCSAAPA PAPSKTRIRW  240
TQDLHERFVD CVSKLGGADR ATPKGILKLM NSDGLTIYHI KSHLQKYRTV KCVPSSSSSS  300
EGKQHEKRAS GSDDVPNLDP KTGMHITEAL RVQLDVQRRL HEQLEIQRKL QVRIEEQGKR  360
LQKMFEDQLK ASGNTAAAAA APGSPEPGCG GDDVVIFPVS DDEDDDVQLL SVASSSYDED  420
LLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-22235291157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-22235291157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-22235291157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-22235291157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G247900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643321e-128AK364332.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023N07.
GenBankAK3709621e-128AK370962.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2121B01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240570.11e-179protein PHR1-LIKE 1
RefseqXP_014750960.11e-179protein PHR1-LIKE 1
TrEMBLI1J3321e-178I1J332_BRADI; Uncharacterized protein
STRINGBRADI5G25320.11e-179(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-53G2-like family protein