PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G246800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ARF | ||||||||
Protein Properties | Length: 950aa MW: 105285 Da PI: 6.3087 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.1e-23 | 144 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F Brast09G246800.1.p 144 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI-- 231 89*********************999*****9555555.49************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++v+r+ Brast09G246800.1.p 232 RDEKSQLLLGVRRA 245 45677789999997 PP | |||||||
2 | Auxin_resp | 116.5 | 2.2e-38 | 270 | 352 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s F+++YnPr+s+s Fvv++++++ka +v+ svGmRf m+fete+ss+rr++Gt+vgvsd+dp+rWpnSkWr+L+ Brast09G246800.1.p 270 AAHAASSGSSFTIYYNPRTSPSPFVVPLARYNKANYVQQSVGMRFAMMFETEESSKRRYTGTIVGVSDYDPIRWPNSKWRNLQ 352 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-44 | 136 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-41 | 137 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-20 | 143 | 244 | No hit | No description |
PROSITE profile | PS50863 | 12.689 | 144 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-20 | 144 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-22 | 144 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.2E-34 | 270 | 352 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.7E-10 | 843 | 932 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.592 | 845 | 929 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.81E-9 | 864 | 924 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 950 aa Download sequence Send to blast |
MASSQEKQPT FGVLRNAAAL LDEMQLLGEA QGAKKVINSE LWHACAGPLV FLPQRGSLVY 60 YFPQGHSEQV AATTRKVPNS RIPNYPNLPS QLLCQVHNIT MHADKETDEV YAQMTLQPVN 120 SETDVFPIPA LGSYPKSKHP PEYFCKNLTA SDTSTHGGFS VPRRAAEKLF PQLDYSMQPP 180 NQELIVRDLH DNMWTFRHIY RGQPKRHLLT TGWSLFVGAK RLKAGDSVLF IRDEKSQLLL 240 GVRRATRQQT QLSSSVLSTD SMHIGVLAAA AHAASSGSSF TIYYNPRTSP SPFVVPLARY 300 NKANYVQQSV GMRFAMMFET EESSKRRYTG TIVGVSDYDP IRWPNSKWRN LQVEWDEHGY 360 GERPERVSIW DIETPENALV FPSSSLNSKR QCLPGYGVPG LEIGSVNMPS FTEIPTVLGN 420 PYGNLQHMPA VGSELAMMLL SQSGQNLGTP LSCHQSSYSS IIQNVKHNYV PPSTFGVSTG 480 PIKQESMHSN EAQQQLHTPK MRRGDLENCE VQPVTDSVSA SELNVAVREP RNTDSYPSQS 540 ISEQNGKGEP KVKTRRSKKG PSRKTISENS ELSSAPSRVC DDQQHGFEVK LVAGDTQQIN 600 SAINEDSSGA LTHGNFARQL QGQQVEQNGS LSPPKLESSK SPDGGKSVNS FPNQGCFSQF 660 FDGLDWMIQP SYYQDSNGIQ SVSASENIFS SSANIPSTIN IDTMEAFQNS CLSDCFPNSI 720 QDFIGSPDLN SITFMPPDMQ NLDVQHDRSN LPSTSNSYVQ MSFSEDSGNH MESIQRSMNN 780 TSCSQPQATE GFDLGMYSKL PSLKETQVLS LPEIHNSSRG TSSCSMDVTD YSIDRSAKLL 840 KPPVRTYTKV QKLGSVGRSI DVTRYRDYRE LRSAIASMFG LQGKLEHPGS SEWKLVYVDY 900 ENDVLLVGDD PWEEFINCVR CIRILSPSEV QQMSESGMHV LNDCIQTDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 18 | 375 | 31 | 390 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G246800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579438.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | I1J310 | 0.0 | I1J310_BRADI; Auxin response factor | ||||
STRING | BRADI5G25157.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G246800.1.p |
Publications ? help Back to Top | |||
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