PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G242200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17954.4 Da PI: 8.8279 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 8 | 56 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +ykGVr++ +g+Wv+eIr+p +r +lg++ t+e Aa+a+++a+k l+ Brast09G242200.1.p 8 RYKGVRQRN-WGSWVSEIRHP-----AmkTRLWLGTYPTEERAARAYDEAAKMLN 56 7*****998.**********8.....345**********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-28 | 8 | 67 | No hit | No description |
SMART | SM00380 | 6.8E-30 | 8 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 8 | 67 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.325 | 8 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-13 | 8 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 8 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MPKVQLERYK GVRQRNWGSW VSEIRHPAMK TRLWLGTYPT EERAARAYDE AAKMLNRPAA 60 RTNFPASVDV TGSLDEYNRA KVEKYRLPPS SSSTTMMVAA PVPSSQEGAK ALAPSPSLTR 120 GGDAMIMTED EQFIEEMIRE MTHYGPIEFV PISSVRSTTD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G242200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579417.1 | 6e-54 | ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | I1J2V3 | 2e-72 | I1J2V3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G24710.1 | 4e-73 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G242200.1.p |