PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G225900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 944aa MW: 102421 Da PI: 6.2175

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G225900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	569	620	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rki+++ Brast09G225900.1.p 569 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRTHGISRWPSRKINKV 620 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	5.1E-5	210	289	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.745	559	640	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-26	572	620	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.43E-23	840	926	No hit	No description
SMART	SM00666	2.1E-22	843	925	IPR000270	PB1 domain
PROSITE profile	PS51745	24.865	843	925	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.3E-23	843	924	No hit	No description
CDD	cd06407	4.48E-30	844	924	No hit	No description
Pfam	PF00564	2.3E-18	844	924	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MDVPAPSSRA GCNGNIGSPV AEPSDDPYGV PATMNFDGYL ELCSPSLADQ LYSLVNDPSA 60 HQMFAMWSSL GSSPRASGMS EDMPLGAYAG VHEPVAATPP QKIDLVSSAN PAETGRVVRS 120 SGEPGADSDP GQGRTSFIPR PVSSNFLADR MLMALSFFRE SLGDGVLAQV WMPVEQEGHV 180 VLSTSDQPFL LDQSLAGYRE VSRNFVFSAK EETGLHPGLP GRVFISGVPE WTSNVLYYSK 240 PEYLRMEYAL RHEVRGSLAM PIYDPSKGSC CAVLELITKK EKPDFNAEMD SVRQALQAVS 300 LKTAKDCGNQ KFYTEKQKAA FTEILDVLRA ICHAHMLPLA LTWVPMSNGI DGAYVVGNDG 360 AIDSQSGKEI LCVHESACYV NDAKMKGFFQ ACAESPLEKG QGIAGRALKS NLPFFSPNIR 420 EYNIMDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPVNCKGSG EQQLLLNNLS 480 STMQRICKSL RTVAESEVDK VDARDAVLYK TTSESVSPTG HSESSSHCDK PITEASFQDL 540 SLVDKQGYME PEQVQSSSMR LAEKKRSTAE KNISLDVLRK YFSGSLKDAA KSLGVCPTTL 600 KRICRTHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDSS LQYDPGTGSL VPAASLPEKR 660 PTSSTDTLPA PSSGKTVEQK SGPKSEQAYS SPDGWQSESY QVPFSNAEKG EGGEFHMQTS 720 NHIDSGDHTS YGANVTTHFS PEGTQGQLYP VGTVSAFHLK ETGSVSPYVS ARPSAENTGD 780 QIVGRNSPSL QQADIDMVDD HEAREHTHPS TSGMTDSSSG SASSHPTFKK NPGHALKGKS 840 GPTLTVKATY NGDTVRFKFL PSLGWYQLLE EIAKRFKLST GTFQLKYKDD EDEWVLLAND 900 SDLQECVDVM DSMGSCNVKL QVRDLPCLIS SSSGSSTCLR LPT*

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MDVPAPSSRA GCNGNIGSPV AEPSDDPYGV PATMNFDGYL ELCSPSLADQ LYSLVNDPSA  60
HQMFAMWSSL GSSPRASGMS EDMPLGAYAG VHEPVAATPP QKIDLVSSAN PAETGRVVRS  120
SGEPGADSDP GQGRTSFIPR PVSSNFLADR MLMALSFFRE SLGDGVLAQV WMPVEQEGHV  180
VLSTSDQPFL LDQSLAGYRE VSRNFVFSAK EETGLHPGLP GRVFISGVPE WTSNVLYYSK  240
PEYLRMEYAL RHEVRGSLAM PIYDPSKGSC CAVLELITKK EKPDFNAEMD SVRQALQAVS  300
LKTAKDCGNQ KFYTEKQKAA FTEILDVLRA ICHAHMLPLA LTWVPMSNGI DGAYVVGNDG  360
AIDSQSGKEI LCVHESACYV NDAKMKGFFQ ACAESPLEKG QGIAGRALKS NLPFFSPNIR  420
EYNIMDYPLA HHARKFGLHA AVAIRLRSTY TGNDDYILEF FLPVNCKGSG EQQLLLNNLS  480
STMQRICKSL RTVAESEVDK VDARDAVLYK TTSESVSPTG HSESSSHCDK PITEASFQDL  540
SLVDKQGYME PEQVQSSSMR LAEKKRSTAE KNISLDVLRK YFSGSLKDAA KSLGVCPTTL  600
KRICRTHGIS RWPSRKINKV NRSLKKIQTV INSVHGVDSS LQYDPGTGSL VPAASLPEKR  660
PTSSTDTLPA PSSGKTVEQK SGPKSEQAYS SPDGWQSESY QVPFSNAEKG EGGEFHMQTS  720
NHIDSGDHTS YGANVTTHFS PEGTQGQLYP VGTVSAFHLK ETGSVSPYVS ARPSAENTGD  780
QIVGRNSPSL QQADIDMVDD HEAREHTHPS TSGMTDSSSG SASSHPTFKK NPGHALKGKS  840
GPTLTVKATY NGDTVRFKFL PSLGWYQLLE EIAKRFKLST GTFQLKYKDD EDEWVLLAND  900
SDLQECVDVM DSMGSCNVKL QVRDLPCLIS SSSGSSTCLR LPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G225900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240492.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	I1J2C5	0.0	I1J2C5_BRADI; Uncharacterized protein
STRING	BRADI5G23300.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Brast09G225900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]