PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G210800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 30466.3 Da PI: 6.1663 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.6 | 1.8e-51 | 11 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+deelv +yL++k++g+ v + +vd++k+ePw+Lp ++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+ Brast09G210800.1.p 11 LPPGFRFHPRDEELVLDYLCHKLSGTGGGGGGVdMVDVDLNKCEPWELPDEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGKDR 101 79************************977767779**************7666789*********************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 e+++ + ++vg++ktLvfy+grapkg+kt+Wvmhe+r Brast09G210800.1.p 102 EIVAGsdgEAAVVGMRKTLVFYRGRAPKGSKTQWVMHEFR 141 ***987666667***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-56 | 3 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.093 | 11 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-26 | 12 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MRSMSMVEAR LPPGFRFHPR DEELVLDYLC HKLSGTGGGG GGVDMVDVDL NKCEPWELPD 60 EACVGGREWY FFSLHDRKYA TGQRTNRATR SGYWKATGKD REIVAGSDGE AAVVGMRKTL 120 VFYRGRAPKG SKTQWVMHEF RRADQSTTRR AASAVDDHHQ LLAGRYSFSS TLLEEDWVLC 180 RVFYKSGAGA PPRLPSYDEA EGSLNSDLGL GVALALPMAP AGVAPLPLPS MSFGDLLSDI 240 VQGSSSGPEL AEVDWSVVDG AGGYTRQLIS GMSHTWNPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 6 | 189 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 6 | 189 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 6 | 189 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 6 | 189 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 6 | 189 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 6 | 189 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 6 | 189 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G210800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370495 | 1e-119 | AK370495.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751258.1 | 1e-157 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-64 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0Q3E9T5 | 1e-155 | A0A0Q3E9T5_BRADI; Uncharacterized protein | ||||
STRING | Traes_2BL_260DF778A.1 | 1e-100 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 3e-64 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G210800.1.p |