PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G208700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 783aa    MW: 88962.4 Da    PI: 6.6868
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G208700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.52.2e-231194190
                FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                        ++Y +YA +vGFsvrk    k+ ++    +r +vCs+eg+r++++ k     r+r etr+gC a+l +k+  +gk++vtk++++HnH+la
  Brast09G208700.2.p 11 EYYVSYAGNVGFSVRKGLWDKTVKS-ASRSRAYVCSREGFRSKNDAK-----RPRLETRMGCPAQLAIKLAANGKYRVTKFVQDHNHQLA 94
                        69***************99999555.589**************9887.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-211194IPR004330FAR1 DNA binding domain
PfamPF105514.6E-25191285IPR018289MULE transposase domain
PROSITE profilePS509669.953458505IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-4460500IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012480507IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MVFENEEKAY EYYVSYAGNV GFSVRKGLWD KTVKSASRSR AYVCSREGFR SKNDAKRPRL  60
ETRMGCPAQL AIKLAANGKY RVTKFVQDHN HQLAGPFDVG MLKSQRVMSK FQSGNRIANN  120
IPPGYKNYLR TKSTKDMNSV DLGYLMDYFR SMKSDNPSFY YAILVDANDK AANVFWADAR  180
SILDYHYFSD VICFDMTYKM NNSSRPLSLF LGMNHHRQMV IFGAAFLYDE TAESFKWLLE  240
TFKSAMCGKQ PKTILTGRSA TLKEALSLTW PGTIHRSCVW QIYQNAIKCL GHLFSTSEEF  300
AHDFSHCIFD VEDGQEFVDT WNAIIEKYDL KKNEWLSELY EDRENWALPY GRQIFCGDIK  360
SMLQAETFGV MVKEYLDCKK ELSYLLKFLA SSVEKSRQEE IQADYKASQG TPGTPQPLLW  420
QAANMYTPIT FELFRREYEL CMDCMVYGCG EFGSLSEYMV TVKNKTREQL VQFDSSDGTI  480
ACTCKKFETA GILCCHILKV HELRNVREIP TQYFLKRWSK DAKMETVDEI SGFNLDTDTG  540
SSVPERYAAL CRLFYRIAAK AAENLEAFAL VASQSDQLVE GVERTLQSTL ADQSSVVHSI  600
KDQLTRMVQN DYLLGSSNEI QKSTGKKKGQ VARGNGLETN KRWRARKGHP DEAVAGPRDG  660
ELNVTPESMQ TEPRNATDQF LPDQLMQEHY VLGHNFGVST SQNLRDNLNQ FGPASSVSTM  720
QEQPFPGNGQ VTQDYPGDMH ALQFVETNPQ IDSENGDQGQ SSIPVWDFLR CASSHDLHTS  780
PR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G208700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2K2CII90.0A0A2K2CII9_BRADI; Uncharacterized protein
STRINGBRADI5G21820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5