PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G208700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 984aa MW: 110236 Da PI: 8.1204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G208700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.1	3e-23	212	295	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk k+ ++ +r +vCs+eg+r++++ k r+r etr+gC a+l +k+ +gk++vtk++++HnH+la Brast09G208700.1.p 212 EYYVSYAGNVGFSVRKGLWDKTVKS-ASRSRAYVCSREGFRSKNDAK-----RPRLETRMGCPAQLAIKLAANGKYRVTKFVQDHNHQLA 295 69*************99999555.589**********9887.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-20	212	295	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-25	392	486	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	659	706	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-4	661	701	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	681	708	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
MSCSRSPFPH SSDSTPHGHT MATTSGDPAA AGNPAASSSA PNQPHHRTPR ISHIVRTYLD 60 LSSNSKKRRA APKNKQPKPG GAGTPAAGEH KGCGPSGVAS VHPSRLLREL GIRVSRYTHE 120 ERQDIITRYM QKRGGRPGVN RAASKVPSRQ ALAGRRRRGA GGKFLGKDDV ETADKPEEKV 180 EEEPELPPEV VANAGGVPIV GMVFENEEKA YEYYVSYAGN VGFSVRKGLW DKTVKSASRS 240 RAYVCSREGF RSKNDAKRPR LETRMGCPAQ LAIKLAANGK YRVTKFVQDH NHQLAGPFDV 300 GMLKSQRVMS KFQSGNRIAN NIPPGYKNYL RTKSTKDMNS VDLGYLMDYF RSMKSDNPSF 360 YYAILVDAND KAANVFWADA RSILDYHYFS DVICFDMTYK MNNSSRPLSL FLGMNHHRQM 420 VIFGAAFLYD ETAESFKWLL ETFKSAMCGK QPKTILTGRS ATLKEALSLT WPGTIHRSCV 480 WQIYQNAIKC LGHLFSTSEE FAHDFSHCIF DVEDGQEFVD TWNAIIEKYD LKKNEWLSEL 540 YEDRENWALP YGRQIFCGDI KSMLQAETFG VMVKEYLDCK KELSYLLKFL ASSVEKSRQE 600 EIQADYKASQ GTPGTPQPLL WQAANMYTPI TFELFRREYE LCMDCMVYGC GEFGSLSEYM 660 VTVKNKTREQ LVQFDSSDGT IACTCKKFET AGILCCHILK VHELRNVREI PTQYFLKRWS 720 KDAKMETVDE ISGFNLDTDT GSSVPERYAA LCRLFYRIAA KAAENLEAFA LVASQSDQLV 780 EGVERTLQST LADQSSVVHS IKDQLTRMVQ NDYLLGSSNE IQKSTGKKKG QVARGNGLET 840 NKRWRARKGH PDEAVAGPRD GELNVTPESM QTEPRNATDQ FLPDQLMQEH YVLGHNFGVS 900 TSQNLRDNLN QFGPASSVST MQEQPFPGNG QVTQDYPGDM HALQFVETNP QIDSENGDQG 960 QSSIPVWDFL RCASSHDLHT SPR*

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

MSCSRSPFPH SSDSTPHGHT MATTSGDPAA AGNPAASSSA PNQPHHRTPR ISHIVRTYLD  60
LSSNSKKRRA APKNKQPKPG GAGTPAAGEH KGCGPSGVAS VHPSRLLREL GIRVSRYTHE  120
ERQDIITRYM QKRGGRPGVN RAASKVPSRQ ALAGRRRRGA GGKFLGKDDV ETADKPEEKV  180
EEEPELPPEV VANAGGVPIV GMVFENEEKA YEYYVSYAGN VGFSVRKGLW DKTVKSASRS  240
RAYVCSREGF RSKNDAKRPR LETRMGCPAQ LAIKLAANGK YRVTKFVQDH NHQLAGPFDV  300
GMLKSQRVMS KFQSGNRIAN NIPPGYKNYL RTKSTKDMNS VDLGYLMDYF RSMKSDNPSF  360
YYAILVDAND KAANVFWADA RSILDYHYFS DVICFDMTYK MNNSSRPLSL FLGMNHHRQM  420
VIFGAAFLYD ETAESFKWLL ETFKSAMCGK QPKTILTGRS ATLKEALSLT WPGTIHRSCV  480
WQIYQNAIKC LGHLFSTSEE FAHDFSHCIF DVEDGQEFVD TWNAIIEKYD LKKNEWLSEL  540
YEDRENWALP YGRQIFCGDI KSMLQAETFG VMVKEYLDCK KELSYLLKFL ASSVEKSRQE  600
EIQADYKASQ GTPGTPQPLL WQAANMYTPI TFELFRREYE LCMDCMVYGC GEFGSLSEYM  660
VTVKNKTREQ LVQFDSSDGT IACTCKKFET AGILCCHILK VHELRNVREI PTQYFLKRWS  720
KDAKMETVDE ISGFNLDTDT GSSVPERYAA LCRLFYRIAA KAAENLEAFA LVASQSDQLV  780
EGVERTLQST LADQSSVVHS IKDQLTRMVQ NDYLLGSSNE IQKSTGKKKG QVARGNGLET  840
NKRWRARKGH PDEAVAGPRD GELNVTPESM QTEPRNATDQ FLPDQLMQEH YVLGHNFGVS  900
TSQNLRDNLN QFGPASSVST MQEQPFPGNG QVTQDYPGDM HALQFVETNP QIDSENGDQG  960
QSSIPVWDFL RCASSHDLHT SPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G208700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240422.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2K2CII9	0.0	A0A2K2CII9_BRADI; Uncharacterized protein
STRING	BRADI5G21820.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast09G208700.1.p