PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G193000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 466aa    MW: 51804.9 Da    PI: 5.0543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G193000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11265311354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +a+ + Er RR+++N ++ +Lrel P++     +K++ a+++  A+eYI +L
  Brast09G193000.1.p 265 KANFATERERREQLNVKYKTLRELFPNP-----TKNDRASVVGDAIEYIDEL 311
                         68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.478262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-11265326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-7268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-9269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-7271313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIIGGDYFEG SHDHSLMAGS LIHDSSQAPK CNDSTDIELQ KFKVPSFSSE ALTNSTNLSS  60
EAARAINHLQ HQLGIDLEQD MPPVETATWD ASICSIQDHI INHQISEDPQ NILVEQQIQQ  120
YDAALYQNSA YTPAPDLLNL LHCTVTPTFP TTTSVFGDTS LSSTNYLDLN GEFTGVAATP  180
ESGLMFTSDS ALQLGYHATQ SHPLKDICNS LPQNYGLFPG EDEREVMIGV GSVGGDIFQD  240
IDDRQFDTVL ECRRGKGEFG KGKGKANFAT ERERREQLNV KYKTLRELFP NPTKNDRASV  300
VGDAIEYIDE LNRTAKELKI LVEQKWHGSK RRKTVKLDEE VAADGESSSM KPMRDDQDNQ  360
FDGTIRSSWV QRRSKECHID VRIVENEVNI KLTEKKKANS LLHAARVLDE FQLELIHVVG  420
GIIGDHHIFM FNTKVSEGSS VYACAVAKRL LQAVDAQHQA INIFH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G193000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625771e-92AK362577.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240358.10.0transcription factor EAT1
RefseqXP_024311738.10.0transcription factor EAT1
RefseqXP_024311739.10.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLI1J1C20.0I1J1C2_BRADI; Uncharacterized protein
STRINGBRADI5G20397.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-50bHLH family protein