PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G190500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 378aa    MW: 40612.5 Da    PI: 4.6562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G190500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  Brast09G190500.1.p 16 KGSWTPEEDMRLIAYIQKFGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                        799*****************************99************97 PP
2Myb_DNA-binding57.33.5e-1869114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+e l++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Brast09G190500.1.p  69 RGNFTAEEEETLIKLHAMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6061163IPR017930Myb domain
SuperFamilySSF466892.25E-3013110IPR009057Homeodomain-like
SMARTSM007178.2E-131565IPR001005SANT/Myb domain
PfamPF002497.2E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-241770IPR009057Homeodomain-like
CDDcd001671.73E-101863No hitNo description
PROSITE profilePS5129425.66364118IPR017930Myb domain
SMARTSM007174.3E-1668116IPR001005SANT/Myb domain
PfamPF002491.9E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2771118IPR009057Homeodomain-like
CDDcd001671.73E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKFGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETL IKLHAMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA  120
AASGPGDKKS KKNRKEGGGK SKKKTDSLPA PSPSQSSSTT TTTTTTMTTN CSSGDSAGEQ  180
QSNTSKEDEG DELDRIMDVP MVDVLGFDFD MLVQDADDDP VPVPDQDTWR VPAAPASPCS  240
STSPPCVADG GGGLLDLPEL DIVPELWSII DGDAEAPWSN AAVAACHVGA GDEGKEKEWW  300
LEDLERELGL WGPIEDYQCI SPAPQAQAQS GRVDLISADV ELDPVSCYFQ AGPAVATSAL  360
QGSEHCSAAL TDNRMDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G190500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486491e-157AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBankAK3696891e-157AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580443.11e-180myb-related protein Zm1
SwissprotP200244e-96MYB1_MAIZE; Myb-related protein Zm1
TrEMBLI1J1861e-178I1J186_BRADI; Uncharacterized protein
STRINGBRADI5G20130.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-71myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]