PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G189800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 331aa    MW: 35937.4 Da    PI: 6.343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G189800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141564148
                        TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
  Brast09G189800.1.p 15 KGPWTEEEDRALVEHIQKRGGHvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                        79**********************************************97 PP
2Myb_DNA-binding51.52.3e-1670114147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T +++ l+v+++ +lG++ W+tIa ++  gRt++++k++w+++
  Brast09G189800.1.p  70 RGNFTDDDERLIVRLHSLLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-21767IPR009057Homeodomain-like
PROSITE profilePS5129416.2081064IPR017930Myb domain
SuperFamilySSF466892.58E-2712111IPR009057Homeodomain-like
SMARTSM007174.1E-91466IPR001005SANT/Myb domain
PfamPF002491.4E-121564IPR001005SANT/Myb domain
CDDcd001671.24E-71764No hitNo description
PROSITE profilePS5129426.13965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2468119IPR009057Homeodomain-like
SMARTSM007176.2E-1569117IPR001005SANT/Myb domain
PfamPF002494.1E-1470114IPR001005SANT/Myb domain
CDDcd001671.21E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QKRGGHVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDDERL IVRLHSLLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPEQQQQH LPEPLLWAAA AASLGGQLDT GLIMQAQLLQ QLLQAIGSSS  180
NNNNTSFVAN LAAGAANAML GSSASIVNPN LLLQDQRMSL LSGSTNYLQP GYGHHGNISN  240
NFAEQDVVQQ LINATSTTAP AGTSSSAAAA AAEPAAAFVS DDAAAPAVER PPVMQEFAEL  300
LEPMEQLPNL CSLESDSFWK DILEDSYRLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G189800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-143AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-179transcription factor MYB39
SwissprotQ8GWP02e-68MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0Q3P5X81e-178A0A0Q3P5X8_BRADI; Uncharacterized protein
STRINGTraes_2AL_5EE86C5BC.11e-137(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-68myb domain protein 9