PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G188800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 326aa    MW: 35107.4 Da    PI: 7.2859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G188800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1369120155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++ + + a+i+  A++++k+L+
  Brast09G188800.1.p  69 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YAHRGDQASIVGGAIDFVKELE 120
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.29E-1467124No hitNo description
PROSITE profilePS5088815.45968119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1868142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1469133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-1169120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1074125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTLDAVCGAA TDALVYDTFN AAAAHDAWTS AAAAMPGEEE GDDEKVQGGR RKRRRRARSC  60
RNREEAESQR MTHIAVERNR RRQMNEYLAV LRSLMPASYA HRGDQASIVG GAIDFVKELE  120
QQLQSLEAQK RALLSSQRRK PPIRDTVPTG PSTAVTAAAA TTSGAGTGAG EEASSPPAAH  180
EEAAGPPFAW FFTYPQYVWR HRRPREDYRP EAEEKRRGGA AAADVEVSLV ETHASVRVMA  240
PRRPGQLLRM VAGMEALRLA VLHLNVTPLG SLALYSLSLK VEEGCGLATA DDVAAAVHHV  300
ICTIDGEATS QQRLLNESPA GSGNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955RRKRRRR
25054RKRRR
35057RKRRRRAR
46980RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G188800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575793e-74AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581588.11e-154transcription factor bHLH96
TrEMBLI1J1591e-152I1J159_BRADI; Uncharacterized protein
STRINGBRADI5G19950.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-45bHLH family protein