PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G183400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 449aa MW: 49816.6 Da PI: 6.5127 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +++G W++I +++g ++t+ q++s+ qk+ Brast09G183400.1.p 59 REKWTEDEHKLFLEAMHLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-15 | 54 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.271 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 56 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-14 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.79E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MARFEQTKAI DDQRPGAGQA GHQNLTEDLR NPLNSSDIDM LAEARVPKAR KPYMITKQRE 60 KWTEDEHKLF LEAMHLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNSNSSG 120 AAAPAIQIPP PRPKRKSVHP YPCNLRSAPG KHAHVLPRLE KPQLQMQQPL WEQVNGSPTS 180 VVTASQIGSE NFDSDTSTID IEERCPTSSI ATDEFAVQVP PTDAEEVKGS STPKEVVCDK 240 SEASVLKLFG KRVVVNDSHQ QPNLCNMQTV TEMELDASAE TTTSGTGKFS SHGASEENTW 300 NPWLINMQHF MYYLPQGAVF FSYNDGSVPY PLMSDPKPVT SDQQHQRQPS EADYKLMRRE 360 ASLVESNTTS SSVPETTTQY SDYAESCTKA NGGDDKIVPV AGLRKYVSPS SIHQRGFMPY 420 KRCAAESKVL QPQDPSEEAD GEMTRLCL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G183400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580392.1 | 0.0 | protein REVEILLE 7-like | ||||
TrEMBL | A0A0Q3IDM3 | 0.0 | A0A0Q3IDM3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G19380.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-32 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast09G183400.1.p |