PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G182000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 403aa    MW: 43105 Da    PI: 6.6584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G182000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.19.7e-3095183185
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  Brast09G182000.1.p  95 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 183
                         89***************************955556888************************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-4187201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2991195IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-2693180No hitNo description
PfamPF023629.6E-2795198IPR003340B3 DNA binding domain
SMARTSM010196.2E-2195200IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73395200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEFTPAGTSS RFSREGEEEE EEEGEELEEE EASPREIPFM TTIAAASSSS SPTSASPSAA  60
ASASASARSS DGAGASGSGG GGGGDVEAID KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY  120
FPLDAAANEK GLLLSFEDRT GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF  180
CRGAAEATRD RLFIDWKRRA ELIRDPHRGL ARLPMPMPTS SPYGPWGAGA GGFYMPPAPP  240
ATLYEHHRLR QGYDFRNINA PAPARQVLFF GSAAGAMPPH APMLPPPQPQ QQPPLHIAVP  300
VQRPSPVVLD SVPLASSPTA ASKRVRLFGV NLDNPHSHGG GESSNDANAL SLRMPGWQRP  360
TPHRLLELPP HGAAGAESSA ASSPSSSSSS KREAHSSLDL DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-60902023116B3 domain-containing transcription factor NGA1
5os9_B1e-60902023116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G182000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745460.0AK374546.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580380.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-128Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLI1J0X20.0I1J0X2_BRADI; Uncharacterized protein
STRINGBRADI5G19260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-64B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]