PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G175100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 301aa    MW: 32309.8 Da    PI: 5.0657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G175100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.74.9e-35111022102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y i++d+e++++isw+++g++fvv+ ++ef++++Lpk FkhsnfaSFvRQLn+YgFkkv  ++         weF+++ F++g+k+
  Brast09G175100.1.p  11 FLTKTYAIVDDPETDDIISWNDSGTTFVVWRRSEFERDLLPKNFKHSNFASFVRQLNTYGFKKVGVDR---------WEFANECFRRGEKH 92 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll  i+r+k 
  Brast09G175100.1.p  93 LLGGIQRRKG 102
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-37594IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-537100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.1E-338100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASPAAGTAP FLTKTYAIVD DPETDDIISW NDSGTTFVVW RRSEFERDLL PKNFKHSNFA  60
SFVRQLNTYG FKKVGVDRWE FANECFRRGE KHLLGGIQRR KGSGAAGVPA SAMIPTAIAL  120
PISPTATSSG GDPAVSSSPP PPPPPPHGLG SAVSGAVAEL EEEISRLRRE NARLSRELAR  180
ARRAFEDVRR VVTRYDHGGE EEDGAAGGKP MLFGVAIGSK RSREDGDEED GAEEDGGDED  240
EEEGEDERQR EKARRTEVSD LNVLALSVRA AAAARPPDVG SRGTKNPSVS LPLGSNRAML  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-25110311123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G175100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581540.41e-151heat stress transcription factor B-2a
SwissprotQ7XRX32e-98HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLA0A2K2CI321e-137A0A2K2CI32_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI5G18680.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-46heat shock transcription factor B4
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]