PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G173800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 289aa MW: 31147.6 Da PI: 9.4009

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G173800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8.2e-28	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt eLH rF++a+e LGG+e AtPk +l+lm+v+gLt++hvkSHLQ+ Rl Brast09G173800.1.p 18 PRMKWTDELHGRFLKAIEWLGGQEYATPKLVLQLMGVNGLTISHVKSHLQMLRL 71 8***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-26	14	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.773	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	5.55E-14	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-21	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-7	19	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGGGKKEAVR QYVRSKVPRM KWTDELHGRF LKAIEWLGGQ EYATPKLVLQ LMGVNGLTIS 60 HVKSHLQMLR LTCARTGTGM KEIQPQLQRK HSCGADEQGP KAFMCPPLKR ARTGTEATSK 120 GMQGSQGISE MRTPGTRYCI DDYMHALAME RRIKEEGLRW QRNTATAASS LQTVGCLEQG 180 SGDFKIIKPE ARHPGPPAVM KKQGPKANDV NGCFLFSSAA SDGQLDGTLE QCSLSLSLGR 240 CPESFRTVSS SRSEGSCIIS SSPRSSGHSA CSDAPGVNLE LSLSICGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-14	19	70	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-14	19	70	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-14	19	70	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-14	19	70	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G173800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240272.1	0.0	uncharacterized protein LOC100827236
TrEMBL	I1J0P1	0.0	I1J0P1_BRADI; Uncharacterized protein
STRING	BRADI5G18590.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast09G173800.1.p