PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G173600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 628aa MW: 65210.4 Da PI: 8.5676 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Brast09G173600.1.p 91 FVCEVCNKGFQREQNLQLHRRGH 113 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00093 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Brast09G173600.1.p 168 WKCDKCSKRYAVQSDWKAHSKIC 190 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.8E-6 | 90 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 90 | 113 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 4.1E-5 | 91 | 113 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 156 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 163 | 188 | No hit | No description |
SMART | SM00355 | 140 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MASNSSAAAA AAFFGIRDGD QQDQMKPLIS QQQQLAAALP GMVANAAAPA TSSQGAPAPA 60 APPAKKKRTL PDPDADVIAL SPKTLMATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK 120 QKNPNQVQRR RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ 180 SDWKAHSKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARLPPPT SLSSLTSHLY 240 GAGAAASAAG NMALSLSQVG SHLSSTMHHD HPELLRLGGN GGGSSIAARL DHLLSPSGPS 300 AFRPPLSSPF FLNAAPVHGP DFGGDDHQNA GPSSFLGQQP SNKPFHGLMQ LPDLQGNGAG 360 GPAAAGGPNS GPHGGLFNLG GFFSSNGNSS GSSGHEHPAS QGGGMMGSDN NQFSGGSDVS 420 AAGIFGGNNS FVGGSDHHQI AGMYNEHQAM QHQQQQILPQ MSATALLQKA AQIGATSSNN 480 NSGVTGSMFR GFVGASPHQQ MGQSQNEQQA HLNDLMNSLA GGNPAGIMFG AAAGSNNGAG 540 MFDPRMCDME AHEVKFSHGG GDMTRDFLGV GGGGIVQQQR GMSAATPRGG GGDQHHQSSS 600 DMSSLEAEMK SASSYNGGGG GGGGRMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 164 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 164 | 234 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G173600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374308 | 0.0 | AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580339.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_010240270.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024311531.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | I1J0N2 | 0.0 | I1J0N2_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G18530.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-102 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast09G173600.1.p |