PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G172500.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 339aa MW: 38387.9 Da PI: 8.9014

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G172500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.8	3.8e-27	197	246	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+k+L+v++++LKr+CRqyGI+RWPhRkiksl Brast09G172500.2.p 197 ASITLVDIAQYFHLPIREASKTLKVGVSILKRKCRQYGIPRWPHRKIKSL 246 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.759	181	266	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-22	198	246	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDAAVSTLSA LAVFVNTADH GAVRSVHGYK VVAKGGGCGW EKWVEREFAF SPSSCRELPA 60 PIAAPRLLSA DWLGRPVYRE GQIVGAWRCI LAFDSVAVVA PPRTPPPMLS PSENPRLMSV 120 PSLYEDLNKV FQFQNPEKVP ELIQCDPDEQ LTRLDERDRT SDEIGESDSD SDDDPQTGEG 180 LPAPVQKQQR ANHKHIASIT LVDIAQYFHL PIREASKTLK VGVSILKRKC RQYGIPRWPH 240 RKIKSLDSLI HDLEYVLDDT ERDGVQREKA KHKKKEREME KEKEKQDAIR ALAKRKKMLE 300 SEKETITLKP ALDLMAETKQ FREDVFKRRY RAKNIASR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G172500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581531.1	0.0	protein RKD5
TrEMBL	A0A0Q3IDA0	0.0	A0A0Q3IDA0_BRADI; Uncharacterized protein
STRING	BRADI5G18430.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Brast09G172500.2.p