PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G166100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 303aa    MW: 31685.7 Da    PI: 8.4169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G166100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05526223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ C+++F ++  L  H+r+H
  Brast09G166100.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                        6********************9 PP
2zf-C2H211.60.00085164186123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F++   L  H  +H
  Brast09G166100.1.p 164 FQCPACKKVFRSYQALGGHRASH 186
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-8526No hitNo description
PfamPF139121.1E-4626IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-8159186No hitNo description
PROSITE profilePS501579.286164186IPR007087Zinc finger, C2H2
SMARTSM003550.026164186IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-11164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM0035566228248IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-8228249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSVAA ARSQISSASS ASTSFAAGDD DAAKAKKAVQ  60
GYVLREKPKR RVRLAESDFS DRESEAEYPT PDAKRAHAGS ADPEPLSSLS DAATPEEDVA  120
MSLMMLSRDS WPAEAWPSSY LADSDDGGGE APPQAAAAQK WTPFQCPACK KVFRSYQALG  180
GHRASHVRGG RGGCCAPPLK QLPPPPPRPA AHPQPLPECE GGSKPQPHKC PYCFRVFASG  240
KALGGHKRSQ LCSAAAAAAS DADPAVVIKS LGLIDLNLPA PFDDVVELSA VSDPFLSSKP  300
GS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KPKRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G166100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580289.11e-135zinc finger protein ZAT1
TrEMBLI1J0D91e-134I1J0D9_BRADI; Uncharacterized protein
STRINGBRADI5G17810.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.18e-30C2H2-like zinc finger protein