PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G166000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 546aa    MW: 56213.1 Da    PI: 6.2762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G166000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-0590108119
                         EEETTTTEEESSHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                         ++C++Cgk Fs+ +++ +H
  Brast09G166000.1.p  90 HVCKNCGKEFSSMDLFLNH 108
                         79****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-41338IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.21638IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6191643IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-51638No hitNo description
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-585109No hitNo description
SMARTSM0035518090110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9390117IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-8259282No hitNo description
SMARTSM003550.77260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055260287IPR007087Zinc finger, C2H2
PfamPF139121.9E-8260284IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-8375402No hitNo description
SMARTSM003550.62380402IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515380402IPR007087Zinc finger, C2H2
PfamPF139125.7E-12380403IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVPWPPPPTQ ATPYKHFCRF CNKGFTCGSA LGGHMRAHAV SDNEPGTGTD DDDDDAPDAP  60
WGPSTSSSGT ARHVYALRAN LPNRLVRGCH VCKNCGKEFS SMDLFLNHGK CNSGEEGGVD  120
GDAGGSLHSS PDPPVGDGDQ VDASSLAAGW SKGKRSCRAK LIGSGDMLAM APLDEPEEEE  180
DLANCLVMLS SSSKADQPAR VADTNAEPYA SGAGKVHGRI MSQQPQPLAY VLPAPDPTMV  240
LPLALPAPQY ASAPVPRGMF ECKACKKLFS SHQALGGHRA SHKKVKGCFA AKPESSAGVS  300
EPPHHAATAG DPNNDKSNAD ARTNYVDAST VGDRNDAGTS EAAEPSLSMA IVTTSTADHE  360
PPVAAQAPAV GSSKRKAKMH ECSVCNRLFS SGQALGGHKR CHWLTSSTGE HASISPLRAE  420
GLLGAAGHQL TLRPLADAPE PELDLTIAAN PSAGNSSLHL DASAAPPTSN PSHQNKKTAT  480
SSHNVNDAVG AGAAAEDEAD STTSAKKARL GDLKVVSTIG ETTPWLQVGI GTSSADGDGN  540
STARE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G166000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581506.10.0uncharacterized protein LOC100823737
TrEMBLA0A0Q3GSG80.0A0A0Q3GSG8_BRADI; Uncharacterized protein
STRINGBRADI5G17800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-19C2H2-like zinc finger protein