PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G161000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 444aa    MW: 48562.4 Da    PI: 8.0709
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G161000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Brast09G161000.1.p  7 CRHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                        ****************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-9153IPR000679Zinc finger, GATA-type
CDDcd002023.64E-15652No hitNo description
SuperFamilySSF577161.76E-11646No hitNo description
Gene3DG3DSA:3.30.50.105.2E-13741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVKEGPCRHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLENYTPMHS RDDIDVDEPR  60
VSKLKPPMSR LKEQRQLKKR PSHIIKKNEP FSDQNFRKMG DADPSRSSSG SAVSYSESCA  120
PYGSADASEM TGSAQSHAWE SLVPSRKRSC VTRSKPSQVE KLVKDLNSIM HEEQFYCLSG  180
SSEEDLLYHS ETAVGSFEIG YGSVLLRHPN SKSVEGDSEA NSVPADNKSY VTSESLSYSG  240
TASFVVHGES KGASNSNALS EKPKWCPVQI HDNARRDKLH YSKQHTLENV DSDLVSVALE  300
VKDSKEIGGK EKISAGKCLV KPAMKHLKRP HESQLQSCQE VKETTRSPKR ASESGAMAPQ  360
FKGSFLPKSG GALNLFMLPP DKLSVLAPQY IDDPDQDLLL EVPPNGRHPE AELLCPPSQL  420
SSVTRSSTSE GRVADGDGRL RQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G161000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227218.10.0uncharacterized protein LOC100829762
TrEMBLI1J0890.0I1J089_BRADI; Uncharacterized protein
STRINGBRADI5G17370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-60GATA transcription factor 26