PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G153600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 278aa    MW: 29617.3 Da    PI: 7.1129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G153600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l d++ ++G  +W+t++ + g+ R +k+c++rw +yl
  Brast09G153600.1.p 15 KGLWSPEEDQKLRDYIIRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62
                        678*******************************************97 PP
2Myb_DNA-binding53.26.6e-1769113248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g +++eE+e    +++ lG++ W++Ia++++ gRt++++k++w++yl
  Brast09G153600.1.p  69 GMFSQEEEETVMSLHATLGNK-WSRIAQHLP-GRTDNEVKNYWNSYL 113
                         569******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8241062IPR017930Myb domain
SuperFamilySSF466891.03E-2713109IPR009057Homeodomain-like
SMARTSM007177.1E-111464IPR001005SANT/Myb domain
PfamPF002496.5E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-211669IPR009057Homeodomain-like
CDDcd001673.20E-101862No hitNo description
PROSITE profilePS5129424.68763117IPR017930Myb domain
SMARTSM007179.4E-1467115IPR001005SANT/Myb domain
PfamPF002499.2E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2670116IPR009057Homeodomain-like
CDDcd001675.43E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGCKSCQKPK AHHRKGLWSP EEDQKLRDYI IRYGHSCWST VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSQEEEETVM SLHATLGNKW SRIAQHLPGR TDNEVKNYWN SYLKKRVEGA  120
QAAPARSAGS GSPQSPAAAL SESGVNRPAN SGSSGPPESS SADDSSCLTG PAAALIRPHA  180
PVLPKVMFAD WLDMDMDCGT GLMAPGLDAG FEAGRGSSPA QGAGSVQVDG PSCSAVDSLQ  240
GLGICWDFDA ADQMQMQMQS GGGFCDLLSM SEFLGIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G153600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705131e-160AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580215.11e-179transcription factor LAF1
SwissprotQ9M0K49e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLI1J0081e-177I1J008_BRADI; Uncharacterized protein
STRINGBRADI5G16672.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-59myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]