PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast09G149100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 200aa MW: 21242.1 Da PI: 10.3699 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.9 | 3.7e-34 | 49 | 161 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssas.nsssg.. 88 +k +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c +++s+s + + Brast09G149100.1.p 49 AKAGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssAPSASVSLLGkR---Pre 136 677789********************************************************98888444443222222222211...022 PP TCP 89 ........................k 89 Brast09G149100.1.p 137 dqeppppssfwealqarpmawglsP 161 3444555555655544444444331 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-29 | 52 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.932 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MASRDAAATF QLYRPMSTSM PTPTPQTMTL PFSAEGADAV VPSAPRKPAK AGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTVEWLLRQA EPSILAATGS GTTPAVFSCS 120 SAPSASVSLL GKRPREDQEP PPPSSFWEAL QARPMAWGLS PSQEAQAYAS VAQGHVHHHH 180 LNLLSALSGA ARPPEEESR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast09G149100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK359408 | 1e-129 | AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580173.1 | 1e-99 | transcription factor TCP21 | ||||
TrEMBL | I1IZV3 | 3e-98 | I1IZV3_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G16270.1 | 4e-99 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08330.1 | 8e-35 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast09G149100.1.p |