PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G145300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 682aa    MW: 73278.8 Da    PI: 7.1455
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G145300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23121223199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +   + ++d +g+++++++iyr++++r++lt+GW++Fv++++L +gD++vF +
  Brast09G145300.1.p 121 FAKTLTQSDANNGGGFSVPRFCAETIfpaldylAEPPVQ--NILVRDVHGEEFKFRHIYRGTPRRHLLTTGWSNFVNQKKLLAGDSIVFLR 209
                         89*********************999*****98667667..6999*********************************************7 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          g +++e +v+++r+
  Brast09G145300.1.p 210 AG-EGGEVHVGIRRA 223
                         76.9999******97 PP
2Auxin_resp116.81.8e-38263346183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+ ++vFevvY+Prast+eF+v++  v++a++v++++GmRfkmafetedss++++ +Gtv+gv+++dpv+Wp+S+Wr+L+
  Brast09G145300.1.p 263 AARLAAAGQVFEVVYYPRASTPEFCVRAGAVQAAMQVRWCPGMRFKMAFETEDSSRISWfMGTVAGVHAADPVHWPQSPWRLLQ 346
                         678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-32115225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-27117227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20120222No hitNo description
PROSITE profilePS5086311.533121224IPR003340B3 DNA binding domain
PfamPF023622.4E-21121223IPR003340B3 DNA binding domain
SMARTSM010193.1E-19121224IPR003340B3 DNA binding domain
PfamPF065074.1E-33263346IPR010525Auxin response factor
PROSITE profilePS5174517.907595673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MLTFTELACP AGSAEEAAAV DSRLWLACAG SMCSVPPVGA AVYYFPQGHA EQAAGAVDLP  60
RPRVPALVPC RVSAVRFMAD PQSDEVFAKI RLLPLRRGEP VADVGEAARE PPRQDSKPAS  120
FAKTLTQSDA NNGGGFSVPR FCAETIFPAL DYLAEPPVQN ILVRDVHGEE FKFRHIYRGT  180
PRRHLLTTGW SNFVNQKKLL AGDSIVFLRA GEGGEVHVGI RRAKRVFCAD AQGPSPASGW  240
GHYSGLMRGN ASSKVPAEDV AAAARLAAAG QVFEVVYYPR ASTPEFCVRA GAVQAAMQVR  300
WCPGMRFKMA FETEDSSRIS WFMGTVAGVH AADPVHWPQS PWRLLQVSWD EPELLQNVKR  360
VCPWLVELVS SMPNLHLPSF SPPRKKPRIP ACADFPFDGH PFFLQPPLAP LGLNPDALAQ  420
QHGHHPLRGF SSFPFPGSGG TPAPAPLAGG IQGARHAHFR PSSADLRTSK HPRSGLRPHD  480
DIRRPASSAL APGISTDLTI GNGASPAATC ALPKAGDDAK PPPTLQLFGQ DILTEEQMTK  540
ASSSNPEAEK AADVSEGSDS VVTQGSTSSN NNSTSSWSLR WFGDSQASEL GLLQPGQCKV  600
FVESDAVGRN LDLSQLSSFE ELYSRMADMF DIESAELRNH VHYRSAAGEV KNVGDEPFRA  660
FVKSARRLTI FAEAGSDSIA V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-761336744388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G145300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641441e-167AK364144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580146.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLI1IZQ90.0I1IZQ9_BRADI; Auxin response factor
STRINGBRADI5G15904.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16