PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast09G142600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 31982.7 Da PI: 5.1977 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.9 | 1.4e-51 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+d+elv++yL kkv++++ + ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+e Brast09G142600.1.p 10 LPPGFRFYPSDQELVCHYLYKKVTNERASQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRE 99 79*************************888.78***************77777889*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +++ vg++ktLvfy+grap+g+kt+Wvmhe+rl Brast09G142600.1.p 100 VRSPsTRAIVGMRKTLVFYQGRAPNGTKTSWVMHEFRL 137 ***966777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-59 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.288 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGLREIESTL PPGFRFYPSD QELVCHYLYK KVTNERASQG TLVEVDLHAR EPWELPDVAK 60 LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSPSTRAIVG MRKTLVFYQG 120 RAPNGTKTSW VMHEFRLDTP HLPPREDWVL CRVFEKQKGD GEQDNVSASS PTFAGSSQQA 180 ATQEPQQPTV DANCNDQIMG FAPRQDQLEE ACGSNYPLLN AAMWQQYSSV LDTFPLQDEI 240 VVGGSPMMGL GARSGAGDDC GSFLFDSGFD DMANLGAGMR FPQGWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 1 | 157 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 1 | 157 | 7 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-50 | 1 | 157 | 4 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 1 | 157 | 4 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast09G142600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248480 | 0.0 | AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580130.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | I1IZM6 | 0.0 | I1IZM6_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G15587.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-81 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Brast09G142600.1.p |