PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G135800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 682aa    MW: 71314.8 Da    PI: 6.5414
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G135800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.17e-11289345155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Brast09G135800.1.p 289 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGKQ-GGYDKEDKAARAYDLAALKYWG 345
                         57*******************5544.2354448877.6699999*************98 PP
2AP251.42.6e-16388439155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Brast09G135800.1.p 388 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 439
                         89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-13289355IPR016177DNA-binding domain
PfamPF008473.7E-8289345IPR001471AP2/ERF domain
CDDcd000187.99E-15289355No hitNo description
Gene3DG3DSA:3.30.730.109.2E-10290353IPR001471AP2/ERF domain
SMARTSM003802.1E-20290359IPR001471AP2/ERF domain
PROSITE profilePS5103216.239290353IPR001471AP2/ERF domain
PRINTSPR003673.7E-6291302IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18388449IPR016177DNA-binding domain
CDDcd000184.83E-22388449No hitNo description
PfamPF008474.9E-10388439IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18389448IPR001471AP2/ERF domain
SMARTSM003803.7E-31389453IPR001471AP2/ERF domain
PROSITE profilePS5103219.493389447IPR001471AP2/ERF domain
PRINTSPR003673.7E-6429449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MASANNWLGF SLSGQGNSQA PHQNGTPAAV AIDVSGAGDF YGLQAQSAPD AHLGMPGLRA  60
DANYGVMDAF HGGGQETQDW AMRGLDYHGG SSELSMLVGS SSGRMTVDDG GAPKLEDFLG  120
GGNSFSDVQD QAGGYLFSGA GAMGGADQAA AHSVDGRGGG STIELSMIKS WLRNDNQGHA  180
QPDQEMSSTD VASAASYACS GALGNGNGNG NAASARGGQQ QAGALALSMS MGSHHAHSQL  240
SVVAAAAAGG GSGAAESTSS DNKRVDSPSA GAAEAGQRKS IDTFGQRTSI YRGVTRHRWT  300
GRYEAHLWDN SCRREGQTRK GKQGGYDKED KAARAYDLAA LKYWGTTTTT NIPISTYEKE  360
IEEMKHMTRQ EYIAYLRRNS SGFSRGASKY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF  420
TTEEEAAEAY DIAAIKFRGL NAVTNFEMSR YDVKSILEGS TLPVGGAARR LKEAAELAEA  480
GVWRAEDGSI VSSHLLTADA GIGMPYHHGW PTSIAFGHGH AHQLMHASPA QALHYPPYGA  540
GWCKPEQDAA GVQHDAQQSQ ELHLGTHNFF HPAARSSSYS NGATGGWYQG VNGNGFLMPP  600
VGTVVDAENV VQGHSGSTAT TANEEGSRLM AAAAGYGDGG DPYAAMRRAY ELSQGSSSSV  660
SVAKVADGYS NNWSSPFNGM G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G135800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640300.0AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580093.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K2CHA20.0A0A2K2CHA2_BRADI; Uncharacterized protein
STRINGBRADI5G14960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-107AP2 family protein