PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G123100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 304aa MW: 34879.3 Da PI: 6.7945

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G123100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168	3.2e-52	13	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrF+Ptdeel+++yL +kv+++++ + ++i evd++k+ePw+Lp+k+k ++ewyf+ ++d+ky+t++r+nrat++gyWk tgk Brast09G123100.1.p 13 LEPGFRFQPTDEELISFYLSQKVKDRSFCT-TAIGEVDMNKCEPWELPMKAKMsgpATTEWYFYYQKDRKYPTSHRTNRATEAGYWKITGK 102 579**********************988.78***********64443334566**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dke+++ +g l+g+kktLvfy grap+g+kt+Wvmheyr+ Brast09G123100.1.p 103 DKEIFHGRGILIGMKKTLVFYMGRAPNGKKTNWVMHEYRI 142 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-55	7	176	IPR003441	NAC domain
PROSITE profile	PS51005	54.777	13	176	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGDHLHHQQH LDLEPGFRFQ PTDEELISFY LSQKVKDRSF CTTAIGEVDM NKCEPWELPM 60 KAKMSGPATT EWYFYYQKDR KYPTSHRTNR ATEAGYWKIT GKDKEIFHGR GILIGMKKTL 120 VFYMGRAPNG KKTNWVMHEY RIVSNNDKLS SYRTNDTIPE SSNPKDEWVV CRIFQKSNGI 180 NEVLVPVYPM VPMNNDQIMP PRDQQQGFDT STTPCTQTIQ LPPLMDPASS MYQLYDNTGS 240 SSLAPLPTND LYFANNQTPP MSLYHHHLQM PTQLGATTDD GFLGTDTWDI VHAVMGPQYH 300 HHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	2	178	1	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	2	178	1	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	2	178	1	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	2	178	1	167	NO APICAL MERISTEM PROTEIN
4dul_A	1e-45	2	178	1	167	NAC domain-containing protein 19
4dul_B	1e-45	2	178	1	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G123100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581365.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FK44	1e-68	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0Q3KSU2	0.0	A0A0Q3KSU2_BRADI; Uncharacterized protein
STRING	Traes_7AL_38B48B7B2.2	3e-82	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-69	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Brast09G123100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]