PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G119200.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 363aa    MW: 40723.7 Da    PI: 5.0106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G119200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.25.1e-30582021128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+P+d el+  +L++kv   +      ++++   i+e+ +i++++P++Lp  +k + ++ yfF++ +++y  gkrk+r+      
  Brast09G119200.3.p  58 LPAGVKFDPSDLELL-THLEAKVGLGNsashilIDEFIPtIQEMeGICYTHPENLP-GIKIDGTNSYFFHTISNAYDVGKRKRRKvvnsdh 146
                         799************.89****988875666654443444999988**********.6777899********************7577777 PP

                 NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                             +  +W++tgk++++ + +g ++g kk+Lv+y g+++kg    kt+W+mh+y+l
  Brast09G119200.3.p 147 tvrDEPIRWHKTGKSRSISE-NGVVKGWKKILVLYIGSKKKGAdidKTNWTMHQYHL 202
                         65433567**********99.99************88888886666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3348221IPR003441NAC domain
PROSITE profilePS5100527.89758221IPR003441NAC domain
PfamPF023657.4E-1359202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MLPLEIEKLV AEAWRECPNC KYRIDNDSST LIITRAPLPD EASDEHSFCA VSSKWPGLPA  60
GVKFDPSDLE LLTHLEAKVG LGNSASHILI DEFIPTIQEM EGICYTHPEN LPGIKIDGTN  120
SYFFHTISNA YDVGKRKRRK VVNSDHTVRD EPIRWHKTGK SRSISENGVV KGWKKILVLY  180
IGSKKKGADI DKTNWTMHQY HLGVEEDEKH GELVVSKIFW QLRSNKTRKS QMYAVDEECD  240
SVAGEIDPTT PMTNPPQPRR LNSSPCKTEQ NEEEDEEYGL LLTGTSQAIN DVATLPGLAE  300
HPLSNGTHTC PKNAPLPLDM DALHGFSDFD KDLFNLPDNP FGSQDSLSWL DLDNKHTEEK  360
EF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G119200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1IYV30.0I1IYV3_BRADI; Uncharacterized protein
STRINGBRADI5G13450.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.19e-68NAC family protein