PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G114300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 450aa    MW: 47367.4 Da    PI: 6.3831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G114300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05299321123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k F++   L  H+ +H
  Brast09G114300.1.p 299 FVCPRCDKKFPTYQALGGHMASH 321
                         89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-7297321No hitNo description
PfamPF139128.6E-11299322IPR007087Zinc finger, C2H2
SMARTSM003550.0047299321IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66299326IPR007087Zinc finger, C2H2
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-7375402No hitNo description
PfamPF139122.3E-8379403IPR007087Zinc finger, C2H2
SMARTSM003550.85380402IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAARAYYLQA AAAATVAQAA AARAGTAEGD VAAPRKVAPR KDRAAAELSM NWAMTAKRGR  60
LPLAPADAGS AGSSSSVTTM LDLESSFCRE EEEAAMILLQ LSGQEERGPA DDEPEEEMPA  120
AQQMLVPVEH QMPAAVAEHE SIPRVDQLEP VPAEHVADAQ DVAMLDAPEV EHVSGPGALL  180
PMMPAAGHVS GGAAVQQADK SAGPPVEHTF GIITESSLAA AIEQAKKVAE VRDKKGKLVL  240
SDAKNPLKKR RLQDIIQFQA AAPQDPQSSS SRAAEAFFLG ASPPATRPRI PSPASTRRFV  300
CPRCDKKFPT YQALGGHMAS HNRANKYGAD GQQHQQLVAQ LAVQSLTPSA STDSGRRRGT  360
NTNLPPPPKE PILLAPRAAH PCSRCELIFR TGQALGGHMR RHWIADKVRA DAAQARAAMD  420
AEAAAASVPA AAPRGEPLDF DLNEMPGEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G114300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311827.11e-151uncharacterized protein LOC112269383
TrEMBLA0A0Q3IAF11e-164A0A0Q3IAF1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-12C2H2 family protein